Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
FOXN3O00409 PPP1R14BP3-201ENST00000509033 445 ntBASIC21.41■■□□□ 1.02
FOXN3O00409 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC21.41■■□□□ 1.02
FOXN3O00409 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC21.41■■□□□ 1.02
FOXN3O00409 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC21.41■■□□□ 1.02
FOXN3O00409 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
FOXN3O00409 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC21.41■■□□□ 1.02
FOXN3O00409 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
FOXN3O00409 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
FOXN3O00409 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC21.4■■□□□ 1.02
FOXN3O00409 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
FOXN3O00409 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
FOXN3O00409 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC21.4■■□□□ 1.02
FOXN3O00409 AC006970.2-201ENST00000450065 779 ntBASIC21.4■■□□□ 1.02
FOXN3O00409 HES2-205ENST00000487437 968 ntTSL 3 BASIC21.4■■□□□ 1.02
FOXN3O00409 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
FOXN3O00409 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC21.4■■□□□ 1.02
FOXN3O00409 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
FOXN3O00409 AL121832.2-201ENST00000610979 668 ntBASIC21.4■■□□□ 1.02
FOXN3O00409 AC092666.2-201ENST00000613287 246 ntBASIC21.4■■□□□ 1.02
FOXN3O00409 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC21.4■■□□□ 1.02
FOXN3O00409 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
FOXN3O00409 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC21.4■■□□□ 1.02
FOXN3O00409 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
FOXN3O00409 AL158211.5-201ENST00000623583 2518 ntBASIC21.39■■□□□ 1.02
FOXN3O00409 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC21.39■■□□□ 1.02
FOXN3O00409 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
FOXN3O00409 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
FOXN3O00409 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
FOXN3O00409 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
FOXN3O00409 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
FOXN3O00409 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
FOXN3O00409 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
FOXN3O00409 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
FOXN3O00409 GPX1P1-201ENST00000388829 606 ntBASIC21.39■■□□□ 1.01
FOXN3O00409 MIPEPP3-201ENST00000412105 444 ntBASIC21.39■■□□□ 1.01
FOXN3O00409 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC21.39■■□□□ 1.01
FOXN3O00409 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC21.39■■□□□ 1.01
FOXN3O00409 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC21.39■■□□□ 1.01
FOXN3O00409 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
FOXN3O00409 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
FOXN3O00409 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
FOXN3O00409 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC21.39■■□□□ 1.01
FOXN3O00409 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC21.39■■□□□ 1.01
FOXN3O00409 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC21.39■■□□□ 1.01
FOXN3O00409 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
FOXN3O00409 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
FOXN3O00409 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
FOXN3O00409 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
FOXN3O00409 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
FOXN3O00409 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC21.38■■□□□ 1.01
FOXN3O00409 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC21.38■■□□□ 1.01
FOXN3O00409 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC21.38■■□□□ 1.01
FOXN3O00409 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
FOXN3O00409 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
FOXN3O00409 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
FOXN3O00409 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC21.38■■□□□ 1.01
FOXN3O00409 MAP2K4P1-201ENST00000438453 1195 ntBASIC21.38■■□□□ 1.01
FOXN3O00409 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC21.38■■□□□ 1.01
FOXN3O00409 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
FOXN3O00409 AC023632.3-201ENST00000521633 145 ntBASIC21.38■■□□□ 1.01
FOXN3O00409 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
FOXN3O00409 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC21.38■■□□□ 1.01
FOXN3O00409 WT1-AS_3.1-201ENST00000613262 234 ntBASIC21.38■■□□□ 1.01
FOXN3O00409 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
FOXN3O00409 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
FOXN3O00409 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
FOXN3O00409 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC21.38■■□□□ 1.01
FOXN3O00409 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
FOXN3O00409 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
FOXN3O00409 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
FOXN3O00409 KRT16P6-202ENST00000425692 1426 ntBASIC21.38■■□□□ 1.01
FOXN3O00409 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
FOXN3O00409 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC21.37■■□□□ 1.01
FOXN3O00409 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
FOXN3O00409 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
FOXN3O00409 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC21.37■■□□□ 1.01
FOXN3O00409 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC21.37■■□□□ 1.01
FOXN3O00409 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
FOXN3O00409 NCF1B-203ENST00000435988 1254 ntBASIC21.37■■□□□ 1.01
FOXN3O00409 GUSBP6-202ENST00000438529 1198 ntBASIC21.37■■□□□ 1.01
FOXN3O00409 OR2A1-AS1-201ENST00000462305 773 ntBASIC21.37■■□□□ 1.01
FOXN3O00409 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC21.37■■□□□ 1.01
FOXN3O00409 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
FOXN3O00409 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC21.37■■□□□ 1.01
FOXN3O00409 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
FOXN3O00409 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
FOXN3O00409 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
FOXN3O00409 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
FOXN3O00409 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
FOXN3O00409 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
FOXN3O00409 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
FOXN3O00409 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
FOXN3O00409 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC21.36■■□□□ 1.01
FOXN3O00409 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
FOXN3O00409 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC21.36■■□□□ 1.01
FOXN3O00409 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
FOXN3O00409 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
FOXN3O00409 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC21.36■■□□□ 1.01
FOXN3O00409 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC21.36■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms