Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRAV3A0A0B4J244 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
TRAV3A0A0B4J244 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRAV3A0A0B4J244 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRAV3A0A0B4J244 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC16.08■□□□□ 0.16
TRAV3A0A0B4J244 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
TRAV3A0A0B4J244 RNF165-205ENST00000588679 2904 ntBASIC16.08■□□□□ 0.16
TRAV3A0A0B4J244 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC16.08■□□□□ 0.16
TRAV3A0A0B4J244 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC16.07■□□□□ 0.16
TRAV3A0A0B4J244 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRAV3A0A0B4J244 POLI-202ENST00000406285 2030 ntTSL 2 BASIC16.07■□□□□ 0.16
TRAV3A0A0B4J244 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TRAV3A0A0B4J244 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRAV3A0A0B4J244 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRAV3A0A0B4J244 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TRAV3A0A0B4J244 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRAV3A0A0B4J244 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRAV3A0A0B4J244 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRAV3A0A0B4J244 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC16.07■□□□□ 0.16
TRAV3A0A0B4J244 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC16.07■□□□□ 0.16
TRAV3A0A0B4J244 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC16.07■□□□□ 0.16
TRAV3A0A0B4J244 KRT18P5-201ENST00000436075 1291 ntBASIC16.07■□□□□ 0.16
TRAV3A0A0B4J244 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC16.07■□□□□ 0.16
TRAV3A0A0B4J244 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC16.07■□□□□ 0.16
TRAV3A0A0B4J244 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC16.07■□□□□ 0.16
TRAV3A0A0B4J244 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TRAV3A0A0B4J244 AC011767.1-201ENST00000617410 1153 ntBASIC16.07■□□□□ 0.16
TRAV3A0A0B4J244 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC16.07■□□□□ 0.16
TRAV3A0A0B4J244 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRAV3A0A0B4J244 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRAV3A0A0B4J244 PTBP1P-201ENST00000554374 1601 ntBASIC16.07■□□□□ 0.16
TRAV3A0A0B4J244 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRAV3A0A0B4J244 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRAV3A0A0B4J244 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRAV3A0A0B4J244 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC16.07■□□□□ 0.16
TRAV3A0A0B4J244 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC16.07■□□□□ 0.16
TRAV3A0A0B4J244 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRAV3A0A0B4J244 PWWP2AP1-201ENST00000429776 2273 ntBASIC16.07■□□□□ 0.16
TRAV3A0A0B4J244 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRAV3A0A0B4J244 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRAV3A0A0B4J244 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRAV3A0A0B4J244 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV3A0A0B4J244 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC16.06■□□□□ 0.16
TRAV3A0A0B4J244 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV3A0A0B4J244 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
TRAV3A0A0B4J244 TREX1-205ENST00000625293 1783 ntBASIC16.06■□□□□ 0.16
TRAV3A0A0B4J244 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV3A0A0B4J244 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV3A0A0B4J244 KRT18P11-201ENST00000435214 1283 ntBASIC16.06■□□□□ 0.16
TRAV3A0A0B4J244 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV3A0A0B4J244 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC16.06■□□□□ 0.16
TRAV3A0A0B4J244 AL162412.1-201ENST00000567129 965 ntBASIC16.06■□□□□ 0.16
TRAV3A0A0B4J244 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC16.06■□□□□ 0.16
TRAV3A0A0B4J244 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC16.06■□□□□ 0.16
TRAV3A0A0B4J244 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
TRAV3A0A0B4J244 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV3A0A0B4J244 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV3A0A0B4J244 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRAV3A0A0B4J244 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
TRAV3A0A0B4J244 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC16.06■□□□□ 0.16
TRAV3A0A0B4J244 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
TRAV3A0A0B4J244 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRAV3A0A0B4J244 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRAV3A0A0B4J244 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC16.05■□□□□ 0.16
TRAV3A0A0B4J244 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRAV3A0A0B4J244 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRAV3A0A0B4J244 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
TRAV3A0A0B4J244 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRAV3A0A0B4J244 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRAV3A0A0B4J244 HSCB-202ENST00000398941 955 ntTSL 2 BASIC16.05■□□□□ 0.16
TRAV3A0A0B4J244 GXYLT1P2-201ENST00000433312 1230 ntBASIC16.05■□□□□ 0.16
TRAV3A0A0B4J244 CNN2P6-201ENST00000439038 900 ntBASIC16.05■□□□□ 0.16
TRAV3A0A0B4J244 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRAV3A0A0B4J244 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC16.05■□□□□ 0.16
TRAV3A0A0B4J244 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC16.05■□□□□ 0.16
TRAV3A0A0B4J244 WWOX-218ENST00000627394 894 ntTSL 5 BASIC16.05■□□□□ 0.16
TRAV3A0A0B4J244 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
TRAV3A0A0B4J244 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
TRAV3A0A0B4J244 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC16.05■□□□□ 0.16
TRAV3A0A0B4J244 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRAV3A0A0B4J244 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRAV3A0A0B4J244 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRAV3A0A0B4J244 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRAV3A0A0B4J244 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV3A0A0B4J244 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
TRAV3A0A0B4J244 AC068338.2-201ENST00000563278 1430 ntBASIC16.04■□□□□ 0.16
TRAV3A0A0B4J244 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV3A0A0B4J244 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC16.04■□□□□ 0.16
TRAV3A0A0B4J244 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
TRAV3A0A0B4J244 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC16.04■□□□□ 0.16
TRAV3A0A0B4J244 RARRES2P4-201ENST00000514074 484 ntBASIC16.04■□□□□ 0.16
TRAV3A0A0B4J244 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC16.04■□□□□ 0.16
TRAV3A0A0B4J244 DUX4L16-201ENST00000555130 1264 ntBASIC16.04■□□□□ 0.16
TRAV3A0A0B4J244 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC16.04■□□□□ 0.16
TRAV3A0A0B4J244 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC16.04■□□□□ 0.16
TRAV3A0A0B4J244 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC16.04■□□□□ 0.16
TRAV3A0A0B4J244 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRAV3A0A0B4J244 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
TRAV3A0A0B4J244 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
TRAV3A0A0B4J244 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms