Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC26.92■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC26.92■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 H19-201ENST00000411754 1788 ntTSL 5 BASIC26.92■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC26.92■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC26.92■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 ESRRAP1-201ENST00000400596 1257 ntBASIC26.92■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC26.92■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC26.92■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC26.92■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC26.92■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC26.91■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC26.91■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 KRT8P36-201ENST00000489121 1440 ntBASIC26.91■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 AC007322.4-201ENST00000509611 723 ntBASIC26.91■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 ADM-205ENST00000528544 586 ntTSL 2 BASIC26.91■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC26.91■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC26.91■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC26.91■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC26.91■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC26.9■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC26.9■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC26.9■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC26.9■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC26.9■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC26.9■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC26.9■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC26.9■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC26.89■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC26.89■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC26.89■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC26.89■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
SENP3-EIF4A1A0A087X0R7 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC26.89■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC26.89■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC26.89■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC26.88■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC26.88■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC26.88■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC26.88■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC26.88■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC26.88■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC26.88■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 FAM21FP-204ENST00000608637 956 ntBASIC26.88■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC26.88■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC26.88■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC26.88■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC26.88■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC26.87■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC26.87■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC26.87■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC26.87■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC26.87■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC26.87■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC26.87■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC26.87■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC26.87■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 AC006058.3-201ENST00000606217 1069 ntBASIC26.87■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC26.87■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC26.87■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC26.87■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC26.87■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC26.86■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC26.86■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC26.86■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC26.86■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms