Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC11.54□□□□□ -0.56
CUX1P39880 AC114755.4-201ENST00000439114 443 ntBASIC11.54□□□□□ -0.56
CUX1P39880 COX4I1P2-201ENST00000447446 547 ntBASIC11.54□□□□□ -0.56
CUX1P39880 ENTPD3-AS1-204ENST00000452768 724 ntTSL 2 BASIC11.54□□□□□ -0.56
CUX1P39880 SNX18P23-201ENST00000510867 677 ntBASIC11.54□□□□□ -0.56
CUX1P39880 AL133399.1-201ENST00000527476 298 ntBASIC11.54□□□□□ -0.56
CUX1P39880 LINC01919-203ENST00000581198 598 ntTSL 3 BASIC11.54□□□□□ -0.56
CUX1P39880 AC023421.2-202ENST00000586213 547 ntTSL 3 BASIC11.54□□□□□ -0.56
CUX1P39880 TEX41-255ENST00000626404 610 ntTSL 5 BASIC11.54□□□□□ -0.56
CUX1P39880 MC2R-201ENST00000327606 3656 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
CUX1P39880 SIRPB1-205ENST00000381605 3241 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
CUX1P39880 NOTCH2-201ENST00000256646 11389 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
CUX1P39880 ANKS1B-211ENST00000547776 3885 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CUX1P39880 OVCH1-201ENST00000318184 3405 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CUX1P39880 THSD7B-201ENST00000272643 5939 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
CUX1P39880 AC010487.3-201ENST00000634278 1966 ntAPPRIS P1 TSL 2 BASIC11.53□□□□□ -0.56
CUX1P39880 KCNMB2-202ENST00000420517 1563 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
CUX1P39880 RAB9B-201ENST00000243298 3748 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CUX1P39880 ST7-206ENST00000393447 2182 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
CUX1P39880 LNPEP-202ENST00000395770 3888 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
CUX1P39880 MAP3K20-208ENST00000539448 2312 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
CUX1P39880 WDR31-203ENST00000374195 3101 ntAPPRIS P3 TSL 5 BASIC11.53□□□□□ -0.56
CUX1P39880 LINC00663-203ENST00000586885 2546 ntBASIC11.53□□□□□ -0.56
CUX1P39880 RN7SKP47-201ENST00000365347 328 ntBASIC11.53□□□□□ -0.56
CUX1P39880 LINC00362-201ENST00000414345 264 ntTSL 2 BASIC11.53□□□□□ -0.56
CUX1P39880 AC099782.1-201ENST00000425889 474 ntBASIC11.53□□□□□ -0.56
CUX1P39880 AC016766.1-201ENST00000429636 714 ntTSL 3 BASIC11.53□□□□□ -0.56
CUX1P39880 GAPDHP33-201ENST00000443168 1013 ntBASIC11.53□□□□□ -0.56
CUX1P39880 AC026774.2-201ENST00000513990 1098 ntBASIC11.53□□□□□ -0.56
CUX1P39880 AC091987.1-201ENST00000517758 464 ntTSL 3 BASIC11.53□□□□□ -0.56
CUX1P39880 SMIM12P1-201ENST00000603004 274 ntBASIC11.53□□□□□ -0.56
CUX1P39880 AC004805.3-201ENST00000603178 310 ntBASIC11.53□□□□□ -0.56
CUX1P39880 AL135999.3-201ENST00000610501 812 ntBASIC11.53□□□□□ -0.56
CUX1P39880 CMKLR1-202ENST00000412676 5110 ntAPPRIS ALT2 TSL 3 BASIC11.53□□□□□ -0.56
CUX1P39880 AC020743.2-201ENST00000639870 1370 ntTSL 5 BASIC11.53□□□□□ -0.56
CUX1P39880 OPHN1-201ENST00000355520 7879 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CUX1P39880 AC121761.1-201ENST00000547326 1482 ntTSL 3 BASIC11.53□□□□□ -0.56
CUX1P39880 ANKRD20A11P-206ENST00000451663 3717 ntBASIC11.53□□□□□ -0.56
CUX1P39880 ZADH2-202ENST00000537114 3205 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
CUX1P39880 HERC3-202ENST00000402738 4974 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
CUX1P39880 RAI14-205ENST00000503673 3339 ntAPPRIS P1 TSL 2 BASIC11.53□□□□□ -0.56
CUX1P39880 MAST4-204ENST00000405643 7713 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
CUX1P39880 C2CD3-202ENST00000334126 7960 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.56
CUX1P39880 TRIM44-201ENST00000299413 12964 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
CUX1P39880 KBTBD11-OT1-204ENST00000635855 6169 ntAPPRIS P5 TSL 5 BASIC11.52□□□□□ -0.56
CUX1P39880 JAZF1-201ENST00000283928 3125 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
CUX1P39880 SPP1-202ENST00000360804 1196 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
CUX1P39880 RPL9P21-201ENST00000392269 505 ntBASIC11.52□□□□□ -0.57
CUX1P39880 RN7SL552P-201ENST00000462094 276 ntBASIC11.52□□□□□ -0.57
CUX1P39880 LINC02114-201ENST00000503757 801 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
CUX1P39880 AL136018.1-202ENST00000555300 488 ntTSL 5 BASIC11.52□□□□□ -0.57
CUX1P39880 AC016526.1-201ENST00000555465 520 ntTSL 3 BASIC11.52□□□□□ -0.57
CUX1P39880 AC006441.3-201ENST00000580121 456 ntTSL 4 BASIC11.52□□□□□ -0.57
CUX1P39880 AC008794.1-201ENST00000593063 560 ntTSL 4 BASIC11.52□□□□□ -0.57
CUX1P39880 AL365181.4-201ENST00000609800 547 ntBASIC11.52□□□□□ -0.57
CUX1P39880 AL122023.1-201ENST00000622847 530 ntBASIC11.52□□□□□ -0.57
CUX1P39880 ATAD1-202ENST00000328142 2939 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
CUX1P39880 LRP2BP-201ENST00000328559 5157 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
CUX1P39880 COL11A1-201ENST00000353414 7173 ntAPPRIS ALT1 TSL 5 BASIC11.52□□□□□ -0.57
CUX1P39880 PSEN1-205ENST00000406768 4062 ntTSL 2 BASIC11.52□□□□□ -0.57
CUX1P39880 FAM182A-201ENST00000376398 5070 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
CUX1P39880 SPTAN1-203ENST00000372739 7868 ntAPPRIS ALT1 TSL 1 (best) BASIC11.52□□□□□ -0.57
CUX1P39880 ARPP21-220ENST00000441454 2880 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
CUX1P39880 CS-201ENST00000351328 2975 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.57
CUX1P39880 NLRP3-202ENST00000348069 3828 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
CUX1P39880 ANKRD42-202ENST00000393389 4066 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
CUX1P39880 CASP5-201ENST00000260315 1414 ntTSL 5 BASIC11.51□□□□□ -0.57
CUX1P39880 RNA5SP474-201ENST00000391234 90 ntBASIC11.51□□□□□ -0.57
CUX1P39880 FAM107A-202ENST00000394481 3465 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
CUX1P39880 CYFIP2-201ENST00000435847 3673 ntTSL 2 BASIC11.51□□□□□ -0.57
CUX1P39880 BCAP29-207ENST00000445771 1157 ntTSL 5 BASIC11.51□□□□□ -0.57
CUX1P39880 AL583856.1-201ENST00000454078 1101 ntBASIC11.51□□□□□ -0.57
CUX1P39880 RPS27P20-201ENST00000492051 246 ntBASIC11.51□□□□□ -0.57
CUX1P39880 AP002001.1-202ENST00000525797 1754 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
CUX1P39880 LINC00944-204ENST00000544499 366 ntTSL 5 BASIC11.51□□□□□ -0.57
CUX1P39880 NR1H4-206ENST00000548884 2884 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
CUX1P39880 CYSLTR2-202ENST00000614739 1908 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
CUX1P39880 RNASE11-211ENST00000620912 883 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
CUX1P39880 AC092574.2-201ENST00000631198 753 ntTSL 3 BASIC11.51□□□□□ -0.57
CUX1P39880 ARHGEF11-202ENST00000368194 6889 ntAPPRIS P4 TSL 1 (best) BASIC11.51□□□□□ -0.57
CUX1P39880 SLFN13-211ENST00000542635 5921 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
CUX1P39880 NSD2-207ENST00000398261 8390 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
CUX1P39880 ZNF793-207ENST00000587986 3869 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
CUX1P39880 FLNB-214ENST00000493452 7402 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
CUX1P39880 SPECC1L-207ENST00000541492 3525 ntTSL 2 BASIC11.51□□□□□ -0.57
CUX1P39880 TCL6-201ENST00000352367 3398 ntTSL 2 BASIC11.51□□□□□ -0.57
CUX1P39880 ADH6-203ENST00000394899 2802 ntAPPRIS ALT1 TSL 2 BASIC11.51□□□□□ -0.57
CUX1P39880 CUZD1-206ENST00000392790 2279 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
CUX1P39880 AP000766.1-201ENST00000561746 4140 ntBASIC11.51□□□□□ -0.57
CUX1P39880 FAM114A1-201ENST00000358869 4050 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
CUX1P39880 EPS15L1-214ENST00000602009 3915 ntTSL 2 BASIC11.51□□□□□ -0.57
CUX1P39880 LMO3-204ENST00000354662 3574 ntAPPRIS P1 TSL 2 BASIC11.51□□□□□ -0.57
CUX1P39880 MAPK10-383ENST00000642032 3390 ntBASIC11.51□□□□□ -0.57
CUX1P39880 ATP6V1C1-201ENST00000395862 5612 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
CUX1P39880 CALML4-203ENST00000395465 4155 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
CUX1P39880 OR1C1-201ENST00000408896 1307 ntAPPRIS P1 BASIC11.5□□□□□ -0.57
CUX1P39880 AMPD3-204ENST00000444303 3994 ntTSL 2 BASIC11.5□□□□□ -0.57
CUX1P39880 AL359694.1-201ENST00000403247 604 ntBASIC11.5□□□□□ -0.57
CUX1P39880 RPA3-204ENST00000406109 434 ntTSL 3 BASIC11.5□□□□□ -0.57
CUX1P39880 GAPDHP57-201ENST00000424400 585 ntBASIC11.5□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms