Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RACGAP1-216ENST00000548961 387 ntTSL 3 BASIC11.63□□□□□ -0.55
CUX1P39880 AC026956.1-201ENST00000558741 396 ntBASIC11.63□□□□□ -0.55
CUX1P39880 NDUFA5P11-201ENST00000567995 343 ntBASIC11.63□□□□□ -0.55
CUX1P39880 CBLN2-203ENST00000581073 537 ntTSL 4 BASIC11.63□□□□□ -0.55
CUX1P39880 CR382285.1-202ENST00000604687 547 ntBASIC11.63□□□□□ -0.55
CUX1P39880 SNORD96A-201ENST00000606577 79 ntBASIC11.63□□□□□ -0.55
CUX1P39880 PDE11A-212ENST00000358450 3489 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CUX1P39880 DYNC2LI1-201ENST00000260605 1399 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
CUX1P39880 LINC02362-203ENST00000617323 2044 ntTSL 2 BASIC11.63□□□□□ -0.55
CUX1P39880 GSDMB-202ENST00000360317 1468 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
CUX1P39880 TRPS1-208ENST00000519076 3329 ntTSL 5 BASIC11.63□□□□□ -0.55
CUX1P39880 AC109361.1-201ENST00000513220 3526 ntTSL 2 BASIC11.63□□□□□ -0.55
CUX1P39880 KAT14-202ENST00000435364 3618 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
CUX1P39880 FTX-215ENST00000638681 9771 ntTSL 5 BASIC11.63□□□□□ -0.55
CUX1P39880 ADGRE1-203ENST00000381404 3056 ntTSL 2 BASIC11.63□□□□□ -0.55
CUX1P39880 FGF9-201ENST00000382353 4220 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CUX1P39880 CCL16-205ENST00000611905 1506 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CUX1P39880 NOTCH2-206ENST00000579475 2954 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CUX1P39880 DLEU2L-201ENST00000371086 3555 ntBASIC11.62□□□□□ -0.55
CUX1P39880 ELOC-201ENST00000284811 683 ntAPPRIS P1 TSL 3 BASIC11.62□□□□□ -0.55
CUX1P39880 AC112484.3-201ENST00000505910 329 ntBASIC11.62□□□□□ -0.55
CUX1P39880 AC006512.2-201ENST00000543250 486 ntBASIC11.62□□□□□ -0.55
CUX1P39880 UBE2CP1-201ENST00000557130 554 ntBASIC11.62□□□□□ -0.55
CUX1P39880 RN7SL230P-201ENST00000580835 303 ntBASIC11.62□□□□□ -0.55
CUX1P39880 GLYATL1P2-202ENST00000588046 902 ntBASIC11.62□□□□□ -0.55
CUX1P39880 AC091133.5-201ENST00000603088 301 ntBASIC11.62□□□□□ -0.55
CUX1P39880 Z99755.2-201ENST00000610215 364 ntTSL 3 BASIC11.62□□□□□ -0.55
CUX1P39880 AP001962.1-201ENST00000624114 559 ntBASIC11.62□□□□□ -0.55
CUX1P39880 AC022400.3-201ENST00000399449 3810 ntTSL 5 BASIC11.62□□□□□ -0.55
CUX1P39880 NRXN1-206ENST00000402717 2508 ntTSL 5 BASIC11.62□□□□□ -0.55
CUX1P39880 KIT-201ENST00000288135 5186 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
CUX1P39880 ALS2CR12-207ENST00000439709 1626 ntAPPRIS ALT2 TSL 2 BASIC11.62□□□□□ -0.55
CUX1P39880 AC006305.1-201ENST00000382897 2558 ntTSL 2 BASIC11.62□□□□□ -0.55
CUX1P39880 OPCML-201ENST00000331898 6833 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CUX1P39880 SORL1-212ENST00000534286 3501 ntTSL 2 BASIC11.62□□□□□ -0.55
CUX1P39880 TCAM1P-205ENST00000478379 3317 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CUX1P39880 HRNR-201ENST00000368801 9623 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CUX1P39880 CCDC77-210ENST00000540180 1652 ntAPPRIS ALT2 TSL 2 BASIC11.61□□□□□ -0.55
CUX1P39880 SRGAP2B-204ENST00000612199 7120 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
CUX1P39880 ZNF101-208ENST00000592502 4627 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CUX1P39880 ATAD5-201ENST00000321990 6869 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CUX1P39880 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CUX1P39880 AL713923.1-201ENST00000414071 378 ntTSL 5 BASIC11.61□□□□□ -0.55
CUX1P39880 AL773545.3-201ENST00000414297 706 ntBASIC11.61□□□□□ -0.55
CUX1P39880 ACKR2-201ENST00000422265 2956 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CUX1P39880 RPS29P14-201ENST00000431518 171 ntBASIC11.61□□□□□ -0.55
CUX1P39880 PRDX1P1-201ENST00000449329 596 ntBASIC11.61□□□□□ -0.55
CUX1P39880 RN7SL39P-201ENST00000462264 297 ntBASIC11.61□□□□□ -0.55
CUX1P39880 NDUFA5P5-201ENST00000468361 342 ntBASIC11.61□□□□□ -0.55
CUX1P39880 SEC62-AS1-201ENST00000479626 346 ntTSL 5 BASIC11.61□□□□□ -0.55
CUX1P39880 AC073842.2-201ENST00000494221 572 ntTSL 4 BASIC11.61□□□□□ -0.55
CUX1P39880 AC113367.2-201ENST00000505749 160 ntBASIC11.61□□□□□ -0.55
CUX1P39880 AP005597.2-201ENST00000526238 341 ntBASIC11.61□□□□□ -0.55
CUX1P39880 AL049836.2-201ENST00000553318 513 ntTSL 5 BASIC11.61□□□□□ -0.55
CUX1P39880 AC013283.1-201ENST00000557282 492 ntBASIC11.61□□□□□ -0.55
CUX1P39880 RN7SL753P-201ENST00000581238 290 ntBASIC11.61□□□□□ -0.55
CUX1P39880 MIR17HG-202ENST00000581816 2032 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CUX1P39880 ZSCAN30-211ENST00000610712 3439 ntTSL 4 BASIC11.61□□□□□ -0.55
CUX1P39880 FAM221B-203ENST00000423537 2931 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
CUX1P39880 DROSHA-220ENST00000513349 4681 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
CUX1P39880 QRSL1P1-201ENST00000400977 1540 ntBASIC11.61□□□□□ -0.55
CUX1P39880 OR2AH1P-202ENST00000641232 2744 ntBASIC11.61□□□□□ -0.55
CUX1P39880 LINC01910-201ENST00000582251 2637 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CUX1P39880 LINC02324-201ENST00000531609 1442 ntTSL 2 BASIC11.61□□□□□ -0.55
CUX1P39880 BOLL-204ENST00000430004 2987 ntTSL 2 BASIC11.61□□□□□ -0.55
CUX1P39880 RAPGEF5-201ENST00000344041 6621 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
CUX1P39880 CUX1-203ENST00000360264 13762 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
CUX1P39880 PPIAP24-201ENST00000328558 471 ntBASIC11.6□□□□□ -0.55
CUX1P39880 RNU1-84P-201ENST00000365447 164 ntBASIC11.6□□□□□ -0.55
CUX1P39880 RNU1-55P-201ENST00000365510 158 ntBASIC11.6□□□□□ -0.55
CUX1P39880 ZNF669-202ENST00000366500 489 ntTSL 3 BASIC11.6□□□□□ -0.55
CUX1P39880 AL050344.1-201ENST00000424084 490 ntTSL 3 BASIC11.6□□□□□ -0.55
CUX1P39880 QKI-206ENST00000424802 954 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CUX1P39880 AL356309.1-201ENST00000425153 339 ntTSL 3 BASIC11.6□□□□□ -0.55
CUX1P39880 GTF2A1-202ENST00000434192 1199 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CUX1P39880 AC114812.2-201ENST00000439336 663 ntTSL 2 BASIC11.6□□□□□ -0.55
CUX1P39880 AL136988.2-201ENST00000440729 861 ntTSL 3 BASIC11.6□□□□□ -0.55
CUX1P39880 AC016722.1-201ENST00000453936 652 ntTSL 5 BASIC11.6□□□□□ -0.55
CUX1P39880 FOXP1-AS1-201ENST00000465742 700 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CUX1P39880 AC117500.1-201ENST00000497352 755 ntBASIC11.6□□□□□ -0.55
CUX1P39880 AC002401.2-201ENST00000511361 430 ntTSL 3 BASIC11.6□□□□□ -0.55
CUX1P39880 AC084121.1-201ENST00000533882 835 ntBASIC11.6□□□□□ -0.55
CUX1P39880 HPS5-207ENST00000537258 1275 ntTSL 5 BASIC11.6□□□□□ -0.55
CUX1P39880 AL671883.2-201ENST00000539514 536 ntTSL 4 BASIC11.6□□□□□ -0.55
CUX1P39880 PPIAL4A-201ENST00000577856 660 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
CUX1P39880 AC243756.1-201ENST00000584068 660 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
CUX1P39880 AC245052.7-201ENST00000601161 359 ntBASIC11.6□□□□□ -0.55
CUX1P39880 AC239809.3-203ENST00000611286 1050 ntTSL 5 BASIC11.6□□□□□ -0.55
CUX1P39880 AC097641.3-201ENST00000613523 464 ntBASIC11.6□□□□□ -0.55
CUX1P39880 uc_338.31-201ENST00000615595 186 ntBASIC11.6□□□□□ -0.55
CUX1P39880 Metazoa_SRP.129-201ENST00000619776 251 ntBASIC11.6□□□□□ -0.55
CUX1P39880 SNORA16A-202ENST00000628458 135 ntBASIC11.6□□□□□ -0.55
CUX1P39880 CASC19-212ENST00000641153 1287 ntBASIC11.6□□□□□ -0.55
CUX1P39880 AL354702.2-202ENST00000641481 890 ntBASIC11.6□□□□□ -0.55
CUX1P39880 ZNF189-202ENST00000339664 3021 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CUX1P39880 ZNF146-202ENST00000456324 3780 ntAPPRIS P1 TSL 2 BASIC11.6□□□□□ -0.55
CUX1P39880 ZNF195-230ENST00000620374 3342 ntAPPRIS ALT2 TSL 5 BASIC11.6□□□□□ -0.55
CUX1P39880 ANKFY1-209ENST00000574367 5033 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
CUX1P39880 HECTD4-202ENST00000377560 15759 ntAPPRIS P5 TSL 5 BASIC11.6□□□□□ -0.55
CUX1P39880 CPEB3-202ENST00000412050 7664 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 78.1 ms