Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 TSHZ2-201ENST00000329613 3093 ntTSL 4 BASIC11.71□□□□□ -0.53
CUX1P39880 TMEM267-202ENST00000500337 2950 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
CUX1P39880 LINC00964-202ENST00000510897 3534 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
CUX1P39880 LY75-CD302-201ENST00000504764 5650 ntAPPRIS P4 TSL 2 BASIC11.71□□□□□ -0.54
CUX1P39880 UEVLD-205ENST00000396197 4156 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.54
CUX1P39880 ANKRD50-201ENST00000504087 8794 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.54
CUX1P39880 OR5B2-201ENST00000302581 1049 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
CUX1P39880 RNA5SP279-201ENST00000365513 117 ntBASIC11.7□□□□□ -0.54
CUX1P39880 BCL11A-205ENST00000409351 756 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
CUX1P39880 CFLAR-212ENST00000440180 1198 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
CUX1P39880 AC007383.1-201ENST00000445875 636 ntBASIC11.7□□□□□ -0.54
CUX1P39880 AC026391.1-201ENST00000450677 537 ntTSL 3 BASIC11.7□□□□□ -0.54
CUX1P39880 AC011752.1-201ENST00000451476 494 ntTSL 5 BASIC11.7□□□□□ -0.54
CUX1P39880 AC095033.1-201ENST00000451611 1096 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
CUX1P39880 IGHV7-34-1-201ENST00000519200 350 ntBASIC11.7□□□□□ -0.54
CUX1P39880 G3BP2-203ENST00000395719 4217 ntAPPRIS P4 TSL 1 (best) BASIC11.7□□□□□ -0.54
CUX1P39880 FAM83F-201ENST00000333407 15561 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CUX1P39880 DEUP1-209ENST00000531792 1656 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
CUX1P39880 KARSP2-201ENST00000415696 1639 ntBASIC11.7□□□□□ -0.54
CUX1P39880 PAIP1-202ENST00000338972 1814 ntAPPRIS P3 TSL 5 BASIC11.7□□□□□ -0.54
CUX1P39880 NCOA1-204ENST00000405141 7405 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
CUX1P39880 PMS2-203ENST00000382321 1386 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
CUX1P39880 POT1-AS1-203ENST00000435452 2147 ntTSL 2 BASIC11.7□□□□□ -0.54
CUX1P39880 LMO3-208ENST00000441439 3515 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CUX1P39880 MYH8-201ENST00000403437 6041 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
CUX1P39880 OR51A10P-201ENST00000307165 937 ntBASIC11.7□□□□□ -0.54
CUX1P39880 FAM183A-201ENST00000335282 488 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
CUX1P39880 PKIB-203ENST00000368446 556 ntTSL 2 BASIC11.7□□□□□ -0.54
CUX1P39880 S100A7L2-201ENST00000368725 339 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
CUX1P39880 FIG4-202ENST00000368941 791 ntTSL 3 BASIC11.7□□□□□ -0.54
CUX1P39880 TINAG-202ENST00000370864 692 ntTSL 2 BASIC11.7□□□□□ -0.54
CUX1P39880 KRTAP3-1-201ENST00000391588 594 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
CUX1P39880 ATF2-205ENST00000409499 801 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
CUX1P39880 OR4A8-201ENST00000418689 945 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
CUX1P39880 LINC00462-201ENST00000425350 962 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
CUX1P39880 AL731544.1-201ENST00000436500 370 ntTSL 5 BASIC11.7□□□□□ -0.54
CUX1P39880 AC007278.2-201ENST00000436582 1200 ntTSL 3 BASIC11.7□□□□□ -0.54
CUX1P39880 AL049651.1-201ENST00000440798 719 ntTSL 5 BASIC11.7□□□□□ -0.54
CUX1P39880 AC096741.2-201ENST00000510225 637 ntTSL 5 BASIC11.7□□□□□ -0.54
CUX1P39880 AC026785.3-201ENST00000511182 285 ntTSL 2 BASIC11.7□□□□□ -0.54
CUX1P39880 RNA5SP318-201ENST00000516352 92 ntBASIC11.7□□□□□ -0.54
CUX1P39880 ZNF525-206ENST00000593918 590 ntTSL 5 BASIC11.7□□□□□ -0.54
CUX1P39880 AL035425.4-201ENST00000624509 1063 ntBASIC11.7□□□□□ -0.54
CUX1P39880 PSMD10P2-202ENST00000626135 819 ntTSL 5 BASIC11.7□□□□□ -0.54
CUX1P39880 AL390036.1-203ENST00000635340 894 ntTSL 5 BASIC11.7□□□□□ -0.54
CUX1P39880 AD000090.1-201ENST00000638356 494 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
CUX1P39880 CASP10-208ENST00000448480 1603 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
CUX1P39880 AMBRA1-206ENST00000528950 4102 ntTSL 5 BASIC11.7□□□□□ -0.54
CUX1P39880 BHLHB9-205ENST00000457056 4082 ntAPPRIS P1 TSL 4 BASIC11.7□□□□□ -0.54
CUX1P39880 SPATA31D5P-201ENST00000376459 4784 ntBASIC11.7□□□□□ -0.54
CUX1P39880 PTPRB-201ENST00000261266 6110 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
CUX1P39880 LINC01877-203ENST00000439734 2287 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
CUX1P39880 AP000542.3-201ENST00000623391 6114 ntBASIC11.7□□□□□ -0.54
CUX1P39880 AL136985.3-201ENST00000637377 2219 ntTSL 5 BASIC11.69□□□□□ -0.54
CUX1P39880 AL022068.1-201ENST00000636202 1875 ntTSL 5 BASIC11.69□□□□□ -0.54
CUX1P39880 SH3GLB1-203ENST00000535010 6227 ntTSL 2 BASIC11.69□□□□□ -0.54
CUX1P39880 CYB5D1-201ENST00000332439 3509 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CUX1P39880 SLC10A7-201ENST00000335472 2798 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CUX1P39880 RAD51AP2-201ENST00000399080 3724 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CUX1P39880 LRAT-206ENST00000507827 2654 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CUX1P39880 LY75-CD302-202ENST00000505052 5482 ntAPPRIS ALT2 TSL 2 BASIC11.69□□□□□ -0.54
CUX1P39880 MAP9-201ENST00000311277 7333 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CUX1P39880 BMX-203ENST00000357607 2598 ntAPPRIS P1 TSL 2 BASIC11.69□□□□□ -0.54
CUX1P39880 CEP128-209ENST00000555265 4662 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
CUX1P39880 BRINP3-201ENST00000367462 3142 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CUX1P39880 TBC1D5-219ENST00000446818 3124 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
CUX1P39880 MTIF2-203ENST00000394600 2221 ntAPPRIS P1 TSL 2 BASIC11.69□□□□□ -0.54
CUX1P39880 ZNF544-216ENST00000600044 2784 ntAPPRIS ALT2 TSL 4 BASIC11.69□□□□□ -0.54
CUX1P39880 VCAM1-204ENST00000370119 2483 ntTSL 2 BASIC11.69□□□□□ -0.54
CUX1P39880 MAN1A2-201ENST00000356554 8576 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CUX1P39880 HCG18-240ENST00000454269 2430 ntTSL 2 BASIC11.69□□□□□ -0.54
CUX1P39880 CACNA1C-202ENST00000335762 6968 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
CUX1P39880 RNA5SP140-201ENST00000364524 92 ntBASIC11.69□□□□□ -0.54
CUX1P39880 RNA5SP115-201ENST00000411160 107 ntBASIC11.69□□□□□ -0.54
CUX1P39880 AL359962.1-201ENST00000417969 303 ntTSL 5 BASIC11.69□□□□□ -0.54
CUX1P39880 AC110015.1-201ENST00000423367 440 ntTSL 3 BASIC11.69□□□□□ -0.54
CUX1P39880 AL354794.2-201ENST00000424795 1248 ntBASIC11.69□□□□□ -0.54
CUX1P39880 GAPDHP20-201ENST00000444107 1007 ntBASIC11.69□□□□□ -0.54
CUX1P39880 AL354953.1-201ENST00000457852 479 ntTSL 5 BASIC11.69□□□□□ -0.54
CUX1P39880 ZNF286A-205ENST00000472486 827 ntTSL 2 BASIC11.69□□□□□ -0.54
CUX1P39880 WDFY3-AS1-201ENST00000510449 493 ntTSL 3 BASIC11.69□□□□□ -0.54
CUX1P39880 AC024145.1-201ENST00000535324 775 ntTSL 3 BASIC11.69□□□□□ -0.54
CUX1P39880 PPP3CB-AS1-215ENST00000620559 656 ntTSL 5 BASIC11.69□□□□□ -0.54
CUX1P39880 AC073592.6-201ENST00000624271 415 ntBASIC11.69□□□□□ -0.54
CUX1P39880 CD53-201ENST00000271324 1505 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CUX1P39880 AC145138.1-201ENST00000512908 2851 ntBASIC11.69□□□□□ -0.54
CUX1P39880 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CUX1P39880 ZNF250-201ENST00000292579 6364 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
CUX1P39880 AC019117.1-201ENST00000636929 1462 ntTSL 5 BASIC11.69□□□□□ -0.54
CUX1P39880 PHYHIPL-202ENST00000373880 3578 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CUX1P39880 MARF1-211ENST00000551742 5900 ntAPPRIS ALT1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CUX1P39880 TNPO1-204ENST00000506351 3028 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CUX1P39880 TYW5-201ENST00000354611 4306 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CUX1P39880 AP004147.1-201ENST00000505153 6314 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
CUX1P39880 SH3YL1-202ENST00000402632 3151 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
CUX1P39880 AC010886.1-201ENST00000437380 2869 ntBASIC11.68□□□□□ -0.54
CUX1P39880 NDUFS1-204ENST00000440274 2394 ntTSL 2 BASIC11.68□□□□□ -0.54
CUX1P39880 LINC01359-204ENST00000447748 2804 ntTSL 2 BASIC11.68□□□□□ -0.54
CUX1P39880 CEP63-202ENST00000337090 5632 ntAPPRIS P3 TSL 5 BASIC11.68□□□□□ -0.54
CUX1P39880 PCDH15-229ENST00000616114 5846 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 97.3 ms