Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC21.53■■□□□ 1.04
SSX2IPQ9Y2D8 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SSX2IPQ9Y2D8 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
SSX2IPQ9Y2D8 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC21.53■■□□□ 1.04
SSX2IPQ9Y2D8 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SSX2IPQ9Y2D8 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
SSX2IPQ9Y2D8 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SSX2IPQ9Y2D8 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
SSX2IPQ9Y2D8 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC21.53■■□□□ 1.04
SSX2IPQ9Y2D8 TK2-204ENST00000525974 1178 ntTSL 2 BASIC21.53■■□□□ 1.04
SSX2IPQ9Y2D8 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC21.53■■□□□ 1.04
SSX2IPQ9Y2D8 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC21.53■■□□□ 1.04
SSX2IPQ9Y2D8 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SSX2IPQ9Y2D8 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC21.53■■□□□ 1.04
SSX2IPQ9Y2D8 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SSX2IPQ9Y2D8 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SSX2IPQ9Y2D8 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC21.53■■□□□ 1.04
SSX2IPQ9Y2D8 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SSX2IPQ9Y2D8 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SSX2IPQ9Y2D8 FBXW4P1-201ENST00000426721 2239 ntBASIC21.52■■□□□ 1.04
SSX2IPQ9Y2D8 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SSX2IPQ9Y2D8 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SSX2IPQ9Y2D8 DYM-203ENST00000442713 2147 ntTSL 2 BASIC21.52■■□□□ 1.04
SSX2IPQ9Y2D8 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SSX2IPQ9Y2D8 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC21.52■■□□□ 1.04
SSX2IPQ9Y2D8 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SSX2IPQ9Y2D8 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SSX2IPQ9Y2D8 DHDH-203ENST00000522614 776 ntTSL 5 BASIC21.52■■□□□ 1.04
SSX2IPQ9Y2D8 LINC01023-201ENST00000606054 436 ntBASIC21.52■■□□□ 1.04
SSX2IPQ9Y2D8 AL121829.2-201ENST00000620908 328 ntBASIC21.52■■□□□ 1.04
SSX2IPQ9Y2D8 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC21.52■■□□□ 1.04
SSX2IPQ9Y2D8 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC21.52■■□□□ 1.04
SSX2IPQ9Y2D8 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
SSX2IPQ9Y2D8 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC21.52■■□□□ 1.04
SSX2IPQ9Y2D8 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
SSX2IPQ9Y2D8 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SSX2IPQ9Y2D8 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC21.51■■□□□ 1.03
SSX2IPQ9Y2D8 STAC-204ENST00000457375 1366 ntTSL 2 BASIC21.51■■□□□ 1.03
SSX2IPQ9Y2D8 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SSX2IPQ9Y2D8 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SSX2IPQ9Y2D8 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
SSX2IPQ9Y2D8 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SSX2IPQ9Y2D8 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC21.51■■□□□ 1.03
SSX2IPQ9Y2D8 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
SSX2IPQ9Y2D8 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC21.51■■□□□ 1.03
SSX2IPQ9Y2D8 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SSX2IPQ9Y2D8 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC21.51■■□□□ 1.03
SSX2IPQ9Y2D8 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
SSX2IPQ9Y2D8 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SSX2IPQ9Y2D8 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC21.51■■□□□ 1.03
SSX2IPQ9Y2D8 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SSX2IPQ9Y2D8 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SSX2IPQ9Y2D8 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SSX2IPQ9Y2D8 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC21.5■■□□□ 1.03
SSX2IPQ9Y2D8 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
SSX2IPQ9Y2D8 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC21.5■■□□□ 1.03
SSX2IPQ9Y2D8 AC211429.1-201ENST00000415277 523 ntBASIC21.5■■□□□ 1.03
SSX2IPQ9Y2D8 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SSX2IPQ9Y2D8 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC21.5■■□□□ 1.03
SSX2IPQ9Y2D8 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SSX2IPQ9Y2D8 RPS20-210ENST00000523936 899 ntTSL 2 BASIC21.5■■□□□ 1.03
SSX2IPQ9Y2D8 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC21.5■■□□□ 1.03
SSX2IPQ9Y2D8 BX088651.1-201ENST00000540551 451 ntBASIC21.5■■□□□ 1.03
SSX2IPQ9Y2D8 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC21.5■■□□□ 1.03
SSX2IPQ9Y2D8 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC21.5■■□□□ 1.03
SSX2IPQ9Y2D8 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
SSX2IPQ9Y2D8 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SSX2IPQ9Y2D8 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC21.5■■□□□ 1.03
SSX2IPQ9Y2D8 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
SSX2IPQ9Y2D8 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
SSX2IPQ9Y2D8 AC244015.2-201ENST00000616358 1861 ntBASIC21.49■■□□□ 1.03
SSX2IPQ9Y2D8 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
SSX2IPQ9Y2D8 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SSX2IPQ9Y2D8 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC21.49■■□□□ 1.03
SSX2IPQ9Y2D8 AC027702.1-201ENST00000563810 1770 ntBASIC21.49■■□□□ 1.03
SSX2IPQ9Y2D8 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SSX2IPQ9Y2D8 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SSX2IPQ9Y2D8 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.49■■□□□ 1.03
SSX2IPQ9Y2D8 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SSX2IPQ9Y2D8 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
SSX2IPQ9Y2D8 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SSX2IPQ9Y2D8 ECEL1P3-201ENST00000427961 737 ntBASIC21.49■■□□□ 1.03
SSX2IPQ9Y2D8 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC21.49■■□□□ 1.03
SSX2IPQ9Y2D8 TSPY7P-201ENST00000431358 1114 ntBASIC21.49■■□□□ 1.03
SSX2IPQ9Y2D8 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC21.49■■□□□ 1.03
SSX2IPQ9Y2D8 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC21.49■■□□□ 1.03
SSX2IPQ9Y2D8 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SSX2IPQ9Y2D8 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC21.49■■□□□ 1.03
SSX2IPQ9Y2D8 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SSX2IPQ9Y2D8 REXO2-216ENST00000544196 452 ntTSL 3 BASIC21.49■■□□□ 1.03
SSX2IPQ9Y2D8 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC21.49■■□□□ 1.03
SSX2IPQ9Y2D8 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
SSX2IPQ9Y2D8 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SSX2IPQ9Y2D8 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC21.49■■□□□ 1.03
SSX2IPQ9Y2D8 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SSX2IPQ9Y2D8 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
SSX2IPQ9Y2D8 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SSX2IPQ9Y2D8 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
SSX2IPQ9Y2D8 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC21.49■■□□□ 1.03
SSX2IPQ9Y2D8 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms