Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.25■□□□□ 0.51
DDX28Q9NUL7 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
DDX28Q9NUL7 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
DDX28Q9NUL7 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
DDX28Q9NUL7 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC18.25■□□□□ 0.51
DDX28Q9NUL7 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
DDX28Q9NUL7 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
DDX28Q9NUL7 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
DDX28Q9NUL7 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
DDX28Q9NUL7 BID-204ENST00000399767 2129 ntTSL 2 BASIC18.25■□□□□ 0.51
DDX28Q9NUL7 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC18.25■□□□□ 0.51
DDX28Q9NUL7 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
DDX28Q9NUL7 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
DDX28Q9NUL7 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
DDX28Q9NUL7 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
DDX28Q9NUL7 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
DDX28Q9NUL7 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
DDX28Q9NUL7 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
DDX28Q9NUL7 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
DDX28Q9NUL7 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC18.24■□□□□ 0.51
DDX28Q9NUL7 AC004408.2-201ENST00000623613 2777 ntBASIC18.24■□□□□ 0.51
DDX28Q9NUL7 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC18.24■□□□□ 0.51
DDX28Q9NUL7 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC18.24■□□□□ 0.51
DDX28Q9NUL7 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC18.24■□□□□ 0.51
DDX28Q9NUL7 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC18.24■□□□□ 0.51
DDX28Q9NUL7 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC18.24■□□□□ 0.51
DDX28Q9NUL7 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC18.24■□□□□ 0.51
DDX28Q9NUL7 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
DDX28Q9NUL7 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
DDX28Q9NUL7 AP004607.4-201ENST00000530158 1459 ntBASIC18.24■□□□□ 0.51
DDX28Q9NUL7 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC18.24■□□□□ 0.51
DDX28Q9NUL7 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.24■□□□□ 0.51
DDX28Q9NUL7 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
DDX28Q9NUL7 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
DDX28Q9NUL7 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.24■□□□□ 0.51
DDX28Q9NUL7 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
DDX28Q9NUL7 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
DDX28Q9NUL7 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
DDX28Q9NUL7 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC18.23■□□□□ 0.51
DDX28Q9NUL7 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.23■□□□□ 0.51
DDX28Q9NUL7 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
DDX28Q9NUL7 PLK5-205ENST00000642079 1969 ntBASIC18.23■□□□□ 0.51
DDX28Q9NUL7 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC18.23■□□□□ 0.51
DDX28Q9NUL7 AC061975.6-201ENST00000579045 1553 ntBASIC18.23■□□□□ 0.51
DDX28Q9NUL7 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
DDX28Q9NUL7 POU5F1P4-201ENST00000413175 1085 ntBASIC18.23■□□□□ 0.51
DDX28Q9NUL7 AC123595.1-201ENST00000440769 1046 ntBASIC18.23■□□□□ 0.51
DDX28Q9NUL7 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
DDX28Q9NUL7 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
DDX28Q9NUL7 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
DDX28Q9NUL7 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
DDX28Q9NUL7 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
DDX28Q9NUL7 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
DDX28Q9NUL7 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
DDX28Q9NUL7 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC18.23■□□□□ 0.51
DDX28Q9NUL7 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.23■□□□□ 0.51
DDX28Q9NUL7 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
DDX28Q9NUL7 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
DDX28Q9NUL7 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
DDX28Q9NUL7 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
DDX28Q9NUL7 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
DDX28Q9NUL7 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
DDX28Q9NUL7 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
DDX28Q9NUL7 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
DDX28Q9NUL7 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
DDX28Q9NUL7 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
DDX28Q9NUL7 JTB-203ENST00000368589 1216 ntTSL 2 BASIC18.22■□□□□ 0.51
DDX28Q9NUL7 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
DDX28Q9NUL7 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC18.22■□□□□ 0.51
DDX28Q9NUL7 AC138907.5-202ENST00000569484 235 ntBASIC18.22■□□□□ 0.51
DDX28Q9NUL7 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC18.22■□□□□ 0.51
DDX28Q9NUL7 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
DDX28Q9NUL7 AC008175.2-201ENST00000612840 297 ntBASIC18.22■□□□□ 0.51
DDX28Q9NUL7 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
DDX28Q9NUL7 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
DDX28Q9NUL7 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC18.22■□□□□ 0.51
DDX28Q9NUL7 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
DDX28Q9NUL7 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
DDX28Q9NUL7 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
DDX28Q9NUL7 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
DDX28Q9NUL7 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
DDX28Q9NUL7 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
DDX28Q9NUL7 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
DDX28Q9NUL7 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
DDX28Q9NUL7 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
DDX28Q9NUL7 AP005212.1-201ENST00000581547 1997 ntBASIC18.21■□□□□ 0.51
DDX28Q9NUL7 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
DDX28Q9NUL7 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
DDX28Q9NUL7 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
DDX28Q9NUL7 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
DDX28Q9NUL7 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
DDX28Q9NUL7 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
DDX28Q9NUL7 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
DDX28Q9NUL7 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
DDX28Q9NUL7 YBX1P1-201ENST00000445822 960 ntBASIC18.21■□□□□ 0.51
DDX28Q9NUL7 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
DDX28Q9NUL7 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
DDX28Q9NUL7 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.21■□□□□ 0.51
DDX28Q9NUL7 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC18.21■□□□□ 0.51
DDX28Q9NUL7 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms