Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
SIX2Q9NPC8 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SIX2Q9NPC8 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC21.53■■□□□ 1.04
SIX2Q9NPC8 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
SIX2Q9NPC8 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SIX2Q9NPC8 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SIX2Q9NPC8 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
SIX2Q9NPC8 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SIX2Q9NPC8 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC21.53■■□□□ 1.04
SIX2Q9NPC8 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SIX2Q9NPC8 METTL15-202ENST00000403099 795 ntTSL 5 BASIC21.53■■□□□ 1.04
SIX2Q9NPC8 AF201337.1-201ENST00000520239 748 ntBASIC21.53■■□□□ 1.04
SIX2Q9NPC8 PHB2-213ENST00000546111 858 ntTSL 2 BASIC21.53■■□□□ 1.04
SIX2Q9NPC8 AC105036.2-201ENST00000569468 176 ntBASIC21.53■■□□□ 1.04
SIX2Q9NPC8 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC21.53■■□□□ 1.04
SIX2Q9NPC8 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SIX2Q9NPC8 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC21.53■■□□□ 1.04
SIX2Q9NPC8 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SIX2Q9NPC8 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
SIX2Q9NPC8 KRT8P20-201ENST00000423953 1409 ntBASIC21.53■■□□□ 1.04
SIX2Q9NPC8 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC21.53■■□□□ 1.04
SIX2Q9NPC8 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SIX2Q9NPC8 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SIX2Q9NPC8 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SIX2Q9NPC8 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SIX2Q9NPC8 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC21.52■■□□□ 1.04
SIX2Q9NPC8 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SIX2Q9NPC8 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SIX2Q9NPC8 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC21.52■■□□□ 1.04
SIX2Q9NPC8 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
SIX2Q9NPC8 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC21.52■■□□□ 1.03
SIX2Q9NPC8 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.03
SIX2Q9NPC8 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
SIX2Q9NPC8 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
SIX2Q9NPC8 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC21.51■■□□□ 1.03
SIX2Q9NPC8 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SIX2Q9NPC8 TREX1-205ENST00000625293 1783 ntBASIC21.51■■□□□ 1.03
SIX2Q9NPC8 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC21.51■■□□□ 1.03
SIX2Q9NPC8 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SIX2Q9NPC8 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC21.51■■□□□ 1.03
SIX2Q9NPC8 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
SIX2Q9NPC8 MKRN4P-201ENST00000444706 1521 ntBASIC21.51■■□□□ 1.03
SIX2Q9NPC8 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC21.51■■□□□ 1.03
SIX2Q9NPC8 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC21.51■■□□□ 1.03
SIX2Q9NPC8 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SIX2Q9NPC8 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC21.51■■□□□ 1.03
SIX2Q9NPC8 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC21.51■■□□□ 1.03
SIX2Q9NPC8 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
SIX2Q9NPC8 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SIX2Q9NPC8 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC21.51■■□□□ 1.03
SIX2Q9NPC8 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
SIX2Q9NPC8 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
SIX2Q9NPC8 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SIX2Q9NPC8 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SIX2Q9NPC8 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SIX2Q9NPC8 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
SIX2Q9NPC8 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SIX2Q9NPC8 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
SIX2Q9NPC8 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SIX2Q9NPC8 AC009237.14-201ENST00000609975 1594 ntBASIC21.5■■□□□ 1.03
SIX2Q9NPC8 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SIX2Q9NPC8 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SIX2Q9NPC8 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SIX2Q9NPC8 GPX1P1-201ENST00000388829 606 ntBASIC21.5■■□□□ 1.03
SIX2Q9NPC8 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SIX2Q9NPC8 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SIX2Q9NPC8 OAS3-207ENST00000551007 998 ntTSL 2 BASIC21.5■■□□□ 1.03
SIX2Q9NPC8 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SIX2Q9NPC8 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SIX2Q9NPC8 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC21.5■■□□□ 1.03
SIX2Q9NPC8 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC21.5■■□□□ 1.03
SIX2Q9NPC8 NXN-202ENST00000537628 1340 ntTSL 3 BASIC21.5■■□□□ 1.03
SIX2Q9NPC8 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
SIX2Q9NPC8 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SIX2Q9NPC8 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC21.49■■□□□ 1.03
SIX2Q9NPC8 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SIX2Q9NPC8 AC007952.6-201ENST00000573168 2673 ntBASIC21.49■■□□□ 1.03
SIX2Q9NPC8 AC003957.1-201ENST00000625108 2673 ntBASIC21.49■■□□□ 1.03
SIX2Q9NPC8 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC21.49■■□□□ 1.03
SIX2Q9NPC8 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SIX2Q9NPC8 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SIX2Q9NPC8 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC21.49■■□□□ 1.03
SIX2Q9NPC8 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC21.49■■□□□ 1.03
SIX2Q9NPC8 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC21.49■■□□□ 1.03
SIX2Q9NPC8 LSM12P1-201ENST00000411836 588 ntBASIC21.49■■□□□ 1.03
SIX2Q9NPC8 AC023632.3-201ENST00000521633 145 ntBASIC21.49■■□□□ 1.03
SIX2Q9NPC8 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC21.49■■□□□ 1.03
SIX2Q9NPC8 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC21.49■■□□□ 1.03
SIX2Q9NPC8 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SIX2Q9NPC8 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SIX2Q9NPC8 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SIX2Q9NPC8 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SIX2Q9NPC8 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC21.48■■□□□ 1.03
SIX2Q9NPC8 GOLGA2P11-201ENST00000562660 1621 ntBASIC21.48■■□□□ 1.03
SIX2Q9NPC8 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
SIX2Q9NPC8 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
SIX2Q9NPC8 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SIX2Q9NPC8 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SIX2Q9NPC8 BX276092.2-201ENST00000417668 665 ntBASIC21.48■■□□□ 1.03
SIX2Q9NPC8 SERP1-205ENST00000487153 657 ntTSL 4 BASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms