Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC17.58■□□□□ 0.4
LIME1Q9H400 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
LIME1Q9H400 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LIME1Q9H400 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
LIME1Q9H400 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
LIME1Q9H400 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.4
LIME1Q9H400 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIME1Q9H400 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC17.57■□□□□ 0.4
LIME1Q9H400 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LIME1Q9H400 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
LIME1Q9H400 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC17.57■□□□□ 0.4
LIME1Q9H400 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIME1Q9H400 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIME1Q9H400 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIME1Q9H400 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIME1Q9H400 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIME1Q9H400 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
LIME1Q9H400 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIME1Q9H400 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIME1Q9H400 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC17.57■□□□□ 0.4
LIME1Q9H400 AC239809.2-201ENST00000415381 517 ntBASIC17.57■□□□□ 0.4
LIME1Q9H400 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC17.57■□□□□ 0.4
LIME1Q9H400 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC17.57■□□□□ 0.4
LIME1Q9H400 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC17.57■□□□□ 0.4
LIME1Q9H400 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIME1Q9H400 AL355075.4-201ENST00000554988 638 ntBASIC17.57■□□□□ 0.4
LIME1Q9H400 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LIME1Q9H400 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIME1Q9H400 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIME1Q9H400 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
LIME1Q9H400 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIME1Q9H400 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
LIME1Q9H400 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LIME1Q9H400 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC17.57■□□□□ 0.4
LIME1Q9H400 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC17.57■□□□□ 0.4
LIME1Q9H400 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIME1Q9H400 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIME1Q9H400 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
LIME1Q9H400 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LIME1Q9H400 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LIME1Q9H400 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIME1Q9H400 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LIME1Q9H400 ME2-216ENST00000639850 2331 ntTSL 5 BASIC17.56■□□□□ 0.4
LIME1Q9H400 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
LIME1Q9H400 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIME1Q9H400 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIME1Q9H400 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIME1Q9H400 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIME1Q9H400 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIME1Q9H400 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LIME1Q9H400 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIME1Q9H400 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIME1Q9H400 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIME1Q9H400 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC17.56■□□□□ 0.4
LIME1Q9H400 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LIME1Q9H400 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC17.56■□□□□ 0.4
LIME1Q9H400 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
LIME1Q9H400 AL445228.2-201ENST00000605589 952 ntBASIC17.56■□□□□ 0.4
LIME1Q9H400 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
LIME1Q9H400 AC006557.6-201ENST00000623071 864 ntBASIC17.56■□□□□ 0.4
LIME1Q9H400 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
LIME1Q9H400 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIME1Q9H400 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC17.56■□□□□ 0.4
LIME1Q9H400 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC17.56■□□□□ 0.4
LIME1Q9H400 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC17.56■□□□□ 0.4
LIME1Q9H400 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC17.56■□□□□ 0.4
LIME1Q9H400 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC17.56■□□□□ 0.4
LIME1Q9H400 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC17.56■□□□□ 0.4
LIME1Q9H400 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC17.56■□□□□ 0.4
LIME1Q9H400 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIME1Q9H400 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LIME1Q9H400 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LIME1Q9H400 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC17.55■□□□□ 0.4
LIME1Q9H400 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
LIME1Q9H400 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LIME1Q9H400 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC17.55■□□□□ 0.4
LIME1Q9H400 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LIME1Q9H400 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LIME1Q9H400 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC17.55■□□□□ 0.4
LIME1Q9H400 KRASP1-201ENST00000407852 552 ntBASIC17.55■□□□□ 0.4
LIME1Q9H400 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC17.55■□□□□ 0.4
LIME1Q9H400 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
LIME1Q9H400 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC17.55■□□□□ 0.4
LIME1Q9H400 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LIME1Q9H400 AC133681.1-201ENST00000465482 601 ntBASIC17.55■□□□□ 0.4
LIME1Q9H400 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
LIME1Q9H400 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC17.55■□□□□ 0.4
LIME1Q9H400 MIR4785-201ENST00000585005 73 ntBASIC17.55■□□□□ 0.4
LIME1Q9H400 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
LIME1Q9H400 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIME1Q9H400 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIME1Q9H400 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIME1Q9H400 PLK5-205ENST00000642079 1969 ntBASIC17.55■□□□□ 0.4
LIME1Q9H400 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
LIME1Q9H400 AC073314.1-201ENST00000568729 2216 ntBASIC17.55■□□□□ 0.4
LIME1Q9H400 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
LIME1Q9H400 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC17.55■□□□□ 0.4
LIME1Q9H400 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIME1Q9H400 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
LIME1Q9H400 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms