Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
VMP1Q96GC9 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VMP1Q96GC9 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
VMP1Q96GC9 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VMP1Q96GC9 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VMP1Q96GC9 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.11■□□□□ 0.65
VMP1Q96GC9 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
VMP1Q96GC9 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.11■□□□□ 0.65
VMP1Q96GC9 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VMP1Q96GC9 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VMP1Q96GC9 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VMP1Q96GC9 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VMP1Q96GC9 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.11■□□□□ 0.65
VMP1Q96GC9 AC073210.2-201ENST00000430369 194 ntBASIC19.11■□□□□ 0.65
VMP1Q96GC9 AC069152.1-201ENST00000438030 544 ntBASIC19.11■□□□□ 0.65
VMP1Q96GC9 RGMA-211ENST00000557420 989 ntTSL 3 BASIC19.11■□□□□ 0.65
VMP1Q96GC9 CYP2T3P-201ENST00000601990 817 ntBASIC19.11■□□□□ 0.65
VMP1Q96GC9 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VMP1Q96GC9 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.11■□□□□ 0.65
VMP1Q96GC9 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VMP1Q96GC9 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VMP1Q96GC9 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
VMP1Q96GC9 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VMP1Q96GC9 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
VMP1Q96GC9 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VMP1Q96GC9 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VMP1Q96GC9 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VMP1Q96GC9 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
VMP1Q96GC9 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
VMP1Q96GC9 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC19.11■□□□□ 0.65
VMP1Q96GC9 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VMP1Q96GC9 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VMP1Q96GC9 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
VMP1Q96GC9 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC19.1■□□□□ 0.65
VMP1Q96GC9 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VMP1Q96GC9 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
VMP1Q96GC9 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
VMP1Q96GC9 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
VMP1Q96GC9 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.1■□□□□ 0.65
VMP1Q96GC9 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VMP1Q96GC9 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
VMP1Q96GC9 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC19.1■□□□□ 0.65
VMP1Q96GC9 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VMP1Q96GC9 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
VMP1Q96GC9 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VMP1Q96GC9 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC19.1■□□□□ 0.65
VMP1Q96GC9 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VMP1Q96GC9 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
VMP1Q96GC9 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VMP1Q96GC9 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
VMP1Q96GC9 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VMP1Q96GC9 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
VMP1Q96GC9 AC011484.1-201ENST00000377652 1995 ntBASIC19.1■□□□□ 0.65
VMP1Q96GC9 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
VMP1Q96GC9 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
VMP1Q96GC9 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VMP1Q96GC9 CYP21A1P-202ENST00000354927 1481 ntBASIC19.09■□□□□ 0.65
VMP1Q96GC9 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.09■□□□□ 0.65
VMP1Q96GC9 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VMP1Q96GC9 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
VMP1Q96GC9 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VMP1Q96GC9 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
VMP1Q96GC9 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC19.09■□□□□ 0.65
VMP1Q96GC9 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VMP1Q96GC9 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
VMP1Q96GC9 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VMP1Q96GC9 LSM12P1-201ENST00000411836 588 ntBASIC19.09■□□□□ 0.65
VMP1Q96GC9 APTR-205ENST00000447009 902 ntTSL 2 BASIC19.09■□□□□ 0.65
VMP1Q96GC9 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC19.09■□□□□ 0.65
VMP1Q96GC9 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC19.09■□□□□ 0.65
VMP1Q96GC9 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VMP1Q96GC9 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VMP1Q96GC9 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VMP1Q96GC9 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VMP1Q96GC9 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
VMP1Q96GC9 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VMP1Q96GC9 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VMP1Q96GC9 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC19.09■□□□□ 0.65
VMP1Q96GC9 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VMP1Q96GC9 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
VMP1Q96GC9 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
VMP1Q96GC9 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VMP1Q96GC9 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
VMP1Q96GC9 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
VMP1Q96GC9 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
VMP1Q96GC9 AL355472.2-201ENST00000422958 438 ntBASIC19.08■□□□□ 0.64
VMP1Q96GC9 PPP1R14BP2-201ENST00000426284 444 ntBASIC19.08■□□□□ 0.64
VMP1Q96GC9 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC19.08■□□□□ 0.64
VMP1Q96GC9 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC19.08■□□□□ 0.64
VMP1Q96GC9 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
VMP1Q96GC9 DENND3-207ENST00000518347 850 ntTSL 2 BASIC19.08■□□□□ 0.64
VMP1Q96GC9 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC19.08■□□□□ 0.64
VMP1Q96GC9 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC19.08■□□□□ 0.64
VMP1Q96GC9 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC19.08■□□□□ 0.64
VMP1Q96GC9 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC19.08■□□□□ 0.64
VMP1Q96GC9 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC19.08■□□□□ 0.64
VMP1Q96GC9 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
VMP1Q96GC9 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
VMP1Q96GC9 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
VMP1Q96GC9 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.08■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms