Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC19.57■□□□□ 0.72
LMX1AQ8TE12 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC19.57■□□□□ 0.72
LMX1AQ8TE12 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LMX1AQ8TE12 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
LMX1AQ8TE12 FP700111.2-201ENST00000619190 1892 ntBASIC19.57■□□□□ 0.72
LMX1AQ8TE12 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC19.57■□□□□ 0.72
LMX1AQ8TE12 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LMX1AQ8TE12 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LMX1AQ8TE12 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LMX1AQ8TE12 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
LMX1AQ8TE12 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC19.57■□□□□ 0.72
LMX1AQ8TE12 RPS20-210ENST00000523936 899 ntTSL 2 BASIC19.57■□□□□ 0.72
LMX1AQ8TE12 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC19.57■□□□□ 0.72
LMX1AQ8TE12 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
LMX1AQ8TE12 AL031963.3-201ENST00000606441 850 ntBASIC19.57■□□□□ 0.72
LMX1AQ8TE12 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC19.57■□□□□ 0.72
LMX1AQ8TE12 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC19.57■□□□□ 0.72
LMX1AQ8TE12 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
LMX1AQ8TE12 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
LMX1AQ8TE12 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LMX1AQ8TE12 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LMX1AQ8TE12 PTBP1P-201ENST00000554374 1601 ntBASIC19.57■□□□□ 0.72
LMX1AQ8TE12 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC19.57■□□□□ 0.72
LMX1AQ8TE12 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LMX1AQ8TE12 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC19.56■□□□□ 0.72
LMX1AQ8TE12 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC19.56■□□□□ 0.72
LMX1AQ8TE12 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.56■□□□□ 0.72
LMX1AQ8TE12 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
LMX1AQ8TE12 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
LMX1AQ8TE12 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LMX1AQ8TE12 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LMX1AQ8TE12 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LMX1AQ8TE12 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LMX1AQ8TE12 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LMX1AQ8TE12 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
LMX1AQ8TE12 SAPCD2P4-201ENST00000424595 1171 ntBASIC19.56■□□□□ 0.72
LMX1AQ8TE12 TSPY15P-201ENST00000457163 923 ntBASIC19.56■□□□□ 0.72
LMX1AQ8TE12 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC19.56■□□□□ 0.72
LMX1AQ8TE12 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
LMX1AQ8TE12 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LMX1AQ8TE12 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LMX1AQ8TE12 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
LMX1AQ8TE12 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.56■□□□□ 0.72
LMX1AQ8TE12 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
LMX1AQ8TE12 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
LMX1AQ8TE12 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
LMX1AQ8TE12 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LMX1AQ8TE12 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
LMX1AQ8TE12 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
LMX1AQ8TE12 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
LMX1AQ8TE12 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
LMX1AQ8TE12 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
LMX1AQ8TE12 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
LMX1AQ8TE12 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC19.55■□□□□ 0.72
LMX1AQ8TE12 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
LMX1AQ8TE12 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC19.55■□□□□ 0.72
LMX1AQ8TE12 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LMX1AQ8TE12 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC19.55■□□□□ 0.72
LMX1AQ8TE12 AF186192.3-201ENST00000583427 947 ntBASIC19.55■□□□□ 0.72
LMX1AQ8TE12 RPS15-203ENST00000586096 570 ntTSL 2 BASIC19.55■□□□□ 0.72
LMX1AQ8TE12 AC004264.1-201ENST00000608354 794 ntBASIC19.55■□□□□ 0.72
LMX1AQ8TE12 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LMX1AQ8TE12 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LMX1AQ8TE12 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LMX1AQ8TE12 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LMX1AQ8TE12 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
LMX1AQ8TE12 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC19.54■□□□□ 0.72
LMX1AQ8TE12 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
LMX1AQ8TE12 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
LMX1AQ8TE12 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
LMX1AQ8TE12 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
LMX1AQ8TE12 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
LMX1AQ8TE12 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LMX1AQ8TE12 TREX2-204ENST00000370212 861 ntTSL 5 BASIC19.54■□□□□ 0.72
LMX1AQ8TE12 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
LMX1AQ8TE12 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LMX1AQ8TE12 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
LMX1AQ8TE12 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LMX1AQ8TE12 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC19.54■□□□□ 0.72
LMX1AQ8TE12 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC19.54■□□□□ 0.72
LMX1AQ8TE12 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC19.54■□□□□ 0.72
LMX1AQ8TE12 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC19.54■□□□□ 0.72
LMX1AQ8TE12 LINC01023-201ENST00000606054 436 ntBASIC19.54■□□□□ 0.72
LMX1AQ8TE12 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.54■□□□□ 0.72
LMX1AQ8TE12 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LMX1AQ8TE12 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LMX1AQ8TE12 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LMX1AQ8TE12 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LMX1AQ8TE12 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LMX1AQ8TE12 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
LMX1AQ8TE12 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC19.53■□□□□ 0.72
LMX1AQ8TE12 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.53■□□□□ 0.72
LMX1AQ8TE12 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
LMX1AQ8TE12 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
LMX1AQ8TE12 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC19.53■□□□□ 0.72
LMX1AQ8TE12 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
LMX1AQ8TE12 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
LMX1AQ8TE12 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
LMX1AQ8TE12 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
LMX1AQ8TE12 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms