Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
PDLIM3Q53GG5 ECEL1P3-201ENST00000427961 737 ntBASIC16.55■□□□□ 0.24
PDLIM3Q53GG5 AL158047.1-201ENST00000445918 881 ntBASIC16.55■□□□□ 0.24
PDLIM3Q53GG5 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC16.55■□□□□ 0.24
PDLIM3Q53GG5 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC16.55■□□□□ 0.24
PDLIM3Q53GG5 TESC-206ENST00000541210 936 ntTSL 3 BASIC16.55■□□□□ 0.24
PDLIM3Q53GG5 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PDLIM3Q53GG5 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PDLIM3Q53GG5 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PDLIM3Q53GG5 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PDLIM3Q53GG5 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
PDLIM3Q53GG5 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PDLIM3Q53GG5 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC16.54■□□□□ 0.24
PDLIM3Q53GG5 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PDLIM3Q53GG5 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC16.54■□□□□ 0.24
PDLIM3Q53GG5 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PDLIM3Q53GG5 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PDLIM3Q53GG5 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC16.54■□□□□ 0.24
PDLIM3Q53GG5 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC16.54■□□□□ 0.24
PDLIM3Q53GG5 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PDLIM3Q53GG5 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PDLIM3Q53GG5 AC007952.6-201ENST00000573168 2673 ntBASIC16.54■□□□□ 0.24
PDLIM3Q53GG5 AC003957.1-201ENST00000625108 2673 ntBASIC16.54■□□□□ 0.24
PDLIM3Q53GG5 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
PDLIM3Q53GG5 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PDLIM3Q53GG5 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PDLIM3Q53GG5 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
PDLIM3Q53GG5 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PDLIM3Q53GG5 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC16.54■□□□□ 0.24
PDLIM3Q53GG5 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PDLIM3Q53GG5 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC16.54■□□□□ 0.24
PDLIM3Q53GG5 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
PDLIM3Q53GG5 USP39-204ENST00000409766 2033 ntTSL 2 BASIC16.53■□□□□ 0.24
PDLIM3Q53GG5 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
PDLIM3Q53GG5 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PDLIM3Q53GG5 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PDLIM3Q53GG5 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC16.53■□□□□ 0.24
PDLIM3Q53GG5 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
PDLIM3Q53GG5 FP700111.2-201ENST00000619190 1892 ntBASIC16.53■□□□□ 0.24
PDLIM3Q53GG5 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PDLIM3Q53GG5 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PDLIM3Q53GG5 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC16.53■□□□□ 0.24
PDLIM3Q53GG5 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC16.53■□□□□ 0.24
PDLIM3Q53GG5 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC16.53■□□□□ 0.24
PDLIM3Q53GG5 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC16.53■□□□□ 0.24
PDLIM3Q53GG5 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC16.53■□□□□ 0.24
PDLIM3Q53GG5 AC098934.4-201ENST00000564127 592 ntBASIC16.53■□□□□ 0.24
PDLIM3Q53GG5 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
PDLIM3Q53GG5 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC16.53■□□□□ 0.24
PDLIM3Q53GG5 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC16.53■□□□□ 0.24
PDLIM3Q53GG5 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
PDLIM3Q53GG5 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
PDLIM3Q53GG5 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PDLIM3Q53GG5 AL512408.1-201ENST00000569378 2000 ntBASIC16.53■□□□□ 0.24
PDLIM3Q53GG5 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC16.53■□□□□ 0.24
PDLIM3Q53GG5 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PDLIM3Q53GG5 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PDLIM3Q53GG5 PCDHAC2-203ENST00000615316 3011 ntBASIC16.53■□□□□ 0.24
PDLIM3Q53GG5 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC16.53■□□□□ 0.24
PDLIM3Q53GG5 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC16.53■□□□□ 0.24
PDLIM3Q53GG5 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
PDLIM3Q53GG5 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC16.52■□□□□ 0.24
PDLIM3Q53GG5 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PDLIM3Q53GG5 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
PDLIM3Q53GG5 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PDLIM3Q53GG5 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC16.52■□□□□ 0.24
PDLIM3Q53GG5 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC16.52■□□□□ 0.24
PDLIM3Q53GG5 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PDLIM3Q53GG5 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PDLIM3Q53GG5 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PDLIM3Q53GG5 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC16.52■□□□□ 0.24
PDLIM3Q53GG5 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC16.52■□□□□ 0.24
PDLIM3Q53GG5 SLC7A5P1-201ENST00000568957 537 ntBASIC16.52■□□□□ 0.24
PDLIM3Q53GG5 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC16.52■□□□□ 0.24
PDLIM3Q53GG5 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
PDLIM3Q53GG5 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
PDLIM3Q53GG5 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
PDLIM3Q53GG5 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
PDLIM3Q53GG5 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
PDLIM3Q53GG5 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
PDLIM3Q53GG5 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC16.52■□□□□ 0.23
PDLIM3Q53GG5 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
PDLIM3Q53GG5 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
PDLIM3Q53GG5 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PDLIM3Q53GG5 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC16.51■□□□□ 0.23
PDLIM3Q53GG5 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PDLIM3Q53GG5 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PDLIM3Q53GG5 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC16.51■□□□□ 0.23
PDLIM3Q53GG5 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
PDLIM3Q53GG5 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
PDLIM3Q53GG5 AL391422.3-201ENST00000603791 2761 ntBASIC16.51■□□□□ 0.23
PDLIM3Q53GG5 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
PDLIM3Q53GG5 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC16.51■□□□□ 0.23
PDLIM3Q53GG5 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
PDLIM3Q53GG5 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PDLIM3Q53GG5 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
PDLIM3Q53GG5 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC16.51■□□□□ 0.23
PDLIM3Q53GG5 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PDLIM3Q53GG5 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
PDLIM3Q53GG5 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms