Protein–RNA interactions for Protein: P61009

SPCS3, Signal peptidase complex subunit 3, humanhuman

Predictions only

Length 180 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPCS3P61009 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SPCS3P61009 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SPCS3P61009 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SPCS3P61009 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC16.24■□□□□ 0.19
SPCS3P61009 LBX2-AS1-202ENST00000603175 2083 ntBASIC16.24■□□□□ 0.19
SPCS3P61009 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
SPCS3P61009 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
SPCS3P61009 SUDS3P1-201ENST00000505831 966 ntBASIC16.24■□□□□ 0.19
SPCS3P61009 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC16.24■□□□□ 0.19
SPCS3P61009 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC16.24■□□□□ 0.19
SPCS3P61009 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC16.24■□□□□ 0.19
SPCS3P61009 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
SPCS3P61009 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SPCS3P61009 KRT8P36-201ENST00000489121 1440 ntBASIC16.24■□□□□ 0.19
SPCS3P61009 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SPCS3P61009 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
SPCS3P61009 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SPCS3P61009 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SPCS3P61009 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SPCS3P61009 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SPCS3P61009 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
SPCS3P61009 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SPCS3P61009 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SPCS3P61009 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
SPCS3P61009 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC16.24■□□□□ 0.19
SPCS3P61009 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
SPCS3P61009 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SPCS3P61009 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
SPCS3P61009 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC16.23■□□□□ 0.19
SPCS3P61009 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC16.23■□□□□ 0.19
SPCS3P61009 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SPCS3P61009 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC16.23■□□□□ 0.19
SPCS3P61009 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SPCS3P61009 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SPCS3P61009 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
SPCS3P61009 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC16.23■□□□□ 0.19
SPCS3P61009 AC005082.1-201ENST00000413042 2259 ntBASIC16.23■□□□□ 0.19
SPCS3P61009 HCG11-201ENST00000411553 5696 ntBASIC16.23■□□□□ 0.19
SPCS3P61009 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
SPCS3P61009 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SPCS3P61009 RHOF-204ENST00000537265 699 ntTSL 2 BASIC16.23■□□□□ 0.19
SPCS3P61009 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
SPCS3P61009 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC16.23■□□□□ 0.19
SPCS3P61009 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SPCS3P61009 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC16.23■□□□□ 0.19
SPCS3P61009 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SPCS3P61009 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
SPCS3P61009 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SPCS3P61009 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC16.23■□□□□ 0.19
SPCS3P61009 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SPCS3P61009 TMEM179-206ENST00000616017 1645 ntBASIC16.23■□□□□ 0.19
SPCS3P61009 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SPCS3P61009 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC16.23■□□□□ 0.19
SPCS3P61009 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC16.23■□□□□ 0.19
SPCS3P61009 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
SPCS3P61009 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SPCS3P61009 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SPCS3P61009 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SPCS3P61009 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SPCS3P61009 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC16.22■□□□□ 0.19
SPCS3P61009 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
SPCS3P61009 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC16.22■□□□□ 0.19
SPCS3P61009 DPP3P2-201ENST00000416030 1696 ntBASIC16.22■□□□□ 0.19
SPCS3P61009 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SPCS3P61009 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC16.22■□□□□ 0.19
SPCS3P61009 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SPCS3P61009 NALT1-201ENST00000429224 738 ntTSL 5 BASIC16.22■□□□□ 0.19
SPCS3P61009 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SPCS3P61009 KRT18P20-201ENST00000548986 1279 ntBASIC16.22■□□□□ 0.19
SPCS3P61009 SLC7A5P2-201ENST00000553010 536 ntBASIC16.22■□□□□ 0.19
SPCS3P61009 CCDC92B-201ENST00000575506 885 ntBASIC16.22■□□□□ 0.19
SPCS3P61009 AP001160.3-201ENST00000601484 763 ntBASIC16.22■□□□□ 0.19
SPCS3P61009 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
SPCS3P61009 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC16.22■□□□□ 0.19
SPCS3P61009 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC16.22■□□□□ 0.19
SPCS3P61009 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
SPCS3P61009 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SPCS3P61009 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SPCS3P61009 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SPCS3P61009 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC16.22■□□□□ 0.19
SPCS3P61009 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC16.22■□□□□ 0.19
SPCS3P61009 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SPCS3P61009 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SPCS3P61009 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SPCS3P61009 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SPCS3P61009 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SPCS3P61009 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SPCS3P61009 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SPCS3P61009 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC16.21■□□□□ 0.19
SPCS3P61009 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SPCS3P61009 H19-201ENST00000411754 1788 ntTSL 5 BASIC16.21■□□□□ 0.19
SPCS3P61009 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SPCS3P61009 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SPCS3P61009 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
SPCS3P61009 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
SPCS3P61009 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SPCS3P61009 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SPCS3P61009 AC007322.3-201ENST00000426526 701 ntBASIC16.21■□□□□ 0.19
SPCS3P61009 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC16.21■□□□□ 0.19
SPCS3P61009 FAM21FP-204ENST00000608637 956 ntBASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms