Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC20.62■□□□□ 0.89
NEK3P51956 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
NEK3P51956 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.62■□□□□ 0.89
NEK3P51956 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC20.62■□□□□ 0.89
NEK3P51956 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NEK3P51956 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
NEK3P51956 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NEK3P51956 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NEK3P51956 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NEK3P51956 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
NEK3P51956 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC20.62■□□□□ 0.89
NEK3P51956 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC20.62■□□□□ 0.89
NEK3P51956 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC20.62■□□□□ 0.89
NEK3P51956 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC20.62■□□□□ 0.89
NEK3P51956 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
NEK3P51956 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC20.62■□□□□ 0.89
NEK3P51956 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
NEK3P51956 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
NEK3P51956 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
NEK3P51956 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.62■□□□□ 0.89
NEK3P51956 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NEK3P51956 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
NEK3P51956 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NEK3P51956 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NEK3P51956 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NEK3P51956 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC20.62■□□□□ 0.89
NEK3P51956 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.61■□□□□ 0.89
NEK3P51956 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NEK3P51956 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NEK3P51956 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NEK3P51956 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NEK3P51956 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NEK3P51956 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC20.61■□□□□ 0.89
NEK3P51956 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.61■□□□□ 0.89
NEK3P51956 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NEK3P51956 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC20.61■□□□□ 0.89
NEK3P51956 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NEK3P51956 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
NEK3P51956 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
NEK3P51956 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
NEK3P51956 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC20.61■□□□□ 0.89
NEK3P51956 AC105020.6-201ENST00000621523 1217 ntBASIC20.61■□□□□ 0.89
NEK3P51956 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
NEK3P51956 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
NEK3P51956 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NEK3P51956 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NEK3P51956 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC20.61■□□□□ 0.89
NEK3P51956 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
NEK3P51956 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
NEK3P51956 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC20.6■□□□□ 0.89
NEK3P51956 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
NEK3P51956 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NEK3P51956 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
NEK3P51956 NME6-213ENST00000451657 871 ntTSL 2 BASIC20.6■□□□□ 0.89
NEK3P51956 FAM201B-201ENST00000458407 597 ntBASIC20.6■□□□□ 0.89
NEK3P51956 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NEK3P51956 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
NEK3P51956 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
NEK3P51956 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
NEK3P51956 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NEK3P51956 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.6■□□□□ 0.89
NEK3P51956 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
NEK3P51956 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
NEK3P51956 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NEK3P51956 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
NEK3P51956 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
NEK3P51956 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.59■□□□□ 0.89
NEK3P51956 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.59■□□□□ 0.89
NEK3P51956 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NEK3P51956 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.59■□□□□ 0.89
NEK3P51956 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NEK3P51956 PGM5P4-201ENST00000421970 445 ntBASIC20.59■□□□□ 0.89
NEK3P51956 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC20.59■□□□□ 0.89
NEK3P51956 HES2-205ENST00000487437 968 ntTSL 3 BASIC20.59■□□□□ 0.89
NEK3P51956 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
NEK3P51956 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
NEK3P51956 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC20.59■□□□□ 0.89
NEK3P51956 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC20.59■□□□□ 0.89
NEK3P51956 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC20.59■□□□□ 0.89
NEK3P51956 AC087633.2-202ENST00000565166 1439 ntBASIC20.59■□□□□ 0.89
NEK3P51956 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
NEK3P51956 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NEK3P51956 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
NEK3P51956 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
NEK3P51956 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.59■□□□□ 0.89
NEK3P51956 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NEK3P51956 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NEK3P51956 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
NEK3P51956 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
NEK3P51956 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.58■□□□□ 0.89
NEK3P51956 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
NEK3P51956 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20.58■□□□□ 0.89
NEK3P51956 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.58■□□□□ 0.89
NEK3P51956 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
NEK3P51956 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
NEK3P51956 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.58■□□□□ 0.89
NEK3P51956 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC20.58■□□□□ 0.89
NEK3P51956 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
NEK3P51956 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
NEK3P51956 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 68.4 ms