Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
SOX2P48431 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SOX2P48431 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SOX2P48431 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SOX2P48431 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
SOX2P48431 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
SOX2P48431 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SOX2P48431 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SOX2P48431 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC17.59■□□□□ 0.41
SOX2P48431 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SOX2P48431 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SOX2P48431 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
SOX2P48431 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SOX2P48431 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SOX2P48431 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SOX2P48431 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SOX2P48431 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SOX2P48431 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SOX2P48431 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SOX2P48431 AC142381.2-201ENST00000566120 298 ntBASIC17.59■□□□□ 0.41
SOX2P48431 FGF8-207ENST00000618991 856 ntTSL 3 BASIC17.59■□□□□ 0.41
SOX2P48431 MCC-208ENST00000514701 2855 ntTSL 2 BASIC17.59■□□□□ 0.41
SOX2P48431 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SOX2P48431 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC17.59■□□□□ 0.41
SOX2P48431 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC17.59■□□□□ 0.41
SOX2P48431 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
SOX2P48431 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.41
SOX2P48431 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SOX2P48431 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
SOX2P48431 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SOX2P48431 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
SOX2P48431 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SOX2P48431 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
SOX2P48431 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SOX2P48431 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.4
SOX2P48431 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC17.58■□□□□ 0.4
SOX2P48431 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC17.58■□□□□ 0.4
SOX2P48431 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SOX2P48431 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
SOX2P48431 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SOX2P48431 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SOX2P48431 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SOX2P48431 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SOX2P48431 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
SOX2P48431 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC17.58■□□□□ 0.4
SOX2P48431 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC17.58■□□□□ 0.4
SOX2P48431 TMEM179-206ENST00000616017 1645 ntBASIC17.58■□□□□ 0.4
SOX2P48431 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
SOX2P48431 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SOX2P48431 BX119927.1-201ENST00000636596 1552 ntBASIC17.57■□□□□ 0.4
SOX2P48431 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SOX2P48431 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
SOX2P48431 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SOX2P48431 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SOX2P48431 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SOX2P48431 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC17.57■□□□□ 0.4
SOX2P48431 AP000974.1-201ENST00000623909 2387 ntBASIC17.57■□□□□ 0.4
SOX2P48431 HYI-206ENST00000372434 1025 ntTSL 5 BASIC17.57■□□□□ 0.4
SOX2P48431 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SOX2P48431 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SOX2P48431 AC091799.1-201ENST00000422823 811 ntBASIC17.57■□□□□ 0.4
SOX2P48431 AC007322.3-201ENST00000426526 701 ntBASIC17.57■□□□□ 0.4
SOX2P48431 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC17.57■□□□□ 0.4
SOX2P48431 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC17.57■□□□□ 0.4
SOX2P48431 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SOX2P48431 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SOX2P48431 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
SOX2P48431 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC17.57■□□□□ 0.4
SOX2P48431 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC17.57■□□□□ 0.4
SOX2P48431 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SOX2P48431 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SOX2P48431 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SOX2P48431 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SOX2P48431 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
SOX2P48431 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC17.56■□□□□ 0.4
SOX2P48431 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
SOX2P48431 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
SOX2P48431 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
SOX2P48431 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SOX2P48431 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC17.56■□□□□ 0.4
SOX2P48431 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SOX2P48431 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SOX2P48431 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SOX2P48431 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SOX2P48431 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC17.56■□□□□ 0.4
SOX2P48431 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC17.56■□□□□ 0.4
SOX2P48431 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC17.56■□□□□ 0.4
SOX2P48431 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SOX2P48431 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SOX2P48431 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SOX2P48431 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SOX2P48431 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC17.56■□□□□ 0.4
SOX2P48431 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC17.56■□□□□ 0.4
SOX2P48431 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SOX2P48431 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
SOX2P48431 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
SOX2P48431 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SOX2P48431 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SOX2P48431 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC17.56■□□□□ 0.4
SOX2P48431 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms