Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC20.23■□□□□ 0.83
TNFRSF4P43489 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC20.23■□□□□ 0.83
TNFRSF4P43489 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
TNFRSF4P43489 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TNFRSF4P43489 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TNFRSF4P43489 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TNFRSF4P43489 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC20.22■□□□□ 0.83
TNFRSF4P43489 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TNFRSF4P43489 AC133561.1-201ENST00000568600 2415 ntBASIC20.22■□□□□ 0.83
TNFRSF4P43489 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TNFRSF4P43489 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC20.22■□□□□ 0.83
TNFRSF4P43489 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.22■□□□□ 0.83
TNFRSF4P43489 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TNFRSF4P43489 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TNFRSF4P43489 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC20.22■□□□□ 0.83
TNFRSF4P43489 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TNFRSF4P43489 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC20.22■□□□□ 0.83
TNFRSF4P43489 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.22■□□□□ 0.83
TNFRSF4P43489 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TNFRSF4P43489 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.22■□□□□ 0.83
TNFRSF4P43489 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TNFRSF4P43489 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
TNFRSF4P43489 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TNFRSF4P43489 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TNFRSF4P43489 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TNFRSF4P43489 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC20.22■□□□□ 0.83
TNFRSF4P43489 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
TNFRSF4P43489 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TNFRSF4P43489 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TNFRSF4P43489 UNC93B2-201ENST00000285383 730 ntBASIC20.21■□□□□ 0.83
TNFRSF4P43489 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.21■□□□□ 0.83
TNFRSF4P43489 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
TNFRSF4P43489 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.21■□□□□ 0.83
TNFRSF4P43489 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.21■□□□□ 0.83
TNFRSF4P43489 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC20.21■□□□□ 0.83
TNFRSF4P43489 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TNFRSF4P43489 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC20.21■□□□□ 0.83
TNFRSF4P43489 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC20.21■□□□□ 0.83
TNFRSF4P43489 AC010331.1-201ENST00000611423 582 ntBASIC20.21■□□□□ 0.83
TNFRSF4P43489 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.21■□□□□ 0.83
TNFRSF4P43489 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TNFRSF4P43489 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TNFRSF4P43489 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TNFRSF4P43489 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TNFRSF4P43489 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TNFRSF4P43489 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC20.21■□□□□ 0.83
TNFRSF4P43489 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TNFRSF4P43489 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TNFRSF4P43489 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TNFRSF4P43489 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
TNFRSF4P43489 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TNFRSF4P43489 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC20.2■□□□□ 0.82
TNFRSF4P43489 NIFKP9-201ENST00000419265 221 ntBASIC20.2■□□□□ 0.82
TNFRSF4P43489 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC20.2■□□□□ 0.82
TNFRSF4P43489 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC20.2■□□□□ 0.82
TNFRSF4P43489 RBM17P1-201ENST00000453646 1190 ntBASIC20.2■□□□□ 0.82
TNFRSF4P43489 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TNFRSF4P43489 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC20.2■□□□□ 0.82
TNFRSF4P43489 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC20.2■□□□□ 0.82
TNFRSF4P43489 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC20.2■□□□□ 0.82
TNFRSF4P43489 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TNFRSF4P43489 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC20.2■□□□□ 0.82
TNFRSF4P43489 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC20.2■□□□□ 0.82
TNFRSF4P43489 REXO1L10P-201ENST00000615707 1290 ntBASIC20.2■□□□□ 0.82
TNFRSF4P43489 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
TNFRSF4P43489 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TNFRSF4P43489 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
TNFRSF4P43489 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC20.2■□□□□ 0.82
TNFRSF4P43489 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.2■□□□□ 0.82
TNFRSF4P43489 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.2■□□□□ 0.82
TNFRSF4P43489 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TNFRSF4P43489 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TNFRSF4P43489 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.19■□□□□ 0.82
TNFRSF4P43489 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
TNFRSF4P43489 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TNFRSF4P43489 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
TNFRSF4P43489 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
TNFRSF4P43489 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.19■□□□□ 0.82
TNFRSF4P43489 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TNFRSF4P43489 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC20.19■□□□□ 0.82
TNFRSF4P43489 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC20.19■□□□□ 0.82
TNFRSF4P43489 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC20.19■□□□□ 0.82
TNFRSF4P43489 CR392000.1-201ENST00000624770 1228 ntBASIC20.19■□□□□ 0.82
TNFRSF4P43489 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC20.19■□□□□ 0.82
TNFRSF4P43489 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TNFRSF4P43489 FP700111.2-201ENST00000619190 1892 ntBASIC20.19■□□□□ 0.82
TNFRSF4P43489 AC005229.4-201ENST00000610085 2198 ntBASIC20.19■□□□□ 0.82
TNFRSF4P43489 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TNFRSF4P43489 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TNFRSF4P43489 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
TNFRSF4P43489 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
TNFRSF4P43489 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.18■□□□□ 0.82
TNFRSF4P43489 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TNFRSF4P43489 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TNFRSF4P43489 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TNFRSF4P43489 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TNFRSF4P43489 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TNFRSF4P43489 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TNFRSF4P43489 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TNFRSF4P43489 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms