Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PTPN9P43378 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
PTPN9P43378 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
PTPN9P43378 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PTPN9P43378 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PTPN9P43378 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
PTPN9P43378 AL691432.2-201ENST00000607222 2038 ntBASIC20.85■□□□□ 0.93
PTPN9P43378 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PTPN9P43378 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
PTPN9P43378 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
PTPN9P43378 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PTPN9P43378 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PTPN9P43378 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PTPN9P43378 AL355802.2-201ENST00000402069 882 ntBASIC20.85■□□□□ 0.93
PTPN9P43378 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PTPN9P43378 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PTPN9P43378 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC20.85■□□□□ 0.93
PTPN9P43378 RGMA-211ENST00000557420 989 ntTSL 3 BASIC20.85■□□□□ 0.93
PTPN9P43378 AC005829.2-201ENST00000571422 1056 ntBASIC20.85■□□□□ 0.93
PTPN9P43378 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC20.85■□□□□ 0.93
PTPN9P43378 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
PTPN9P43378 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC20.85■□□□□ 0.93
PTPN9P43378 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.85■□□□□ 0.93
PTPN9P43378 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
PTPN9P43378 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PTPN9P43378 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PTPN9P43378 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PTPN9P43378 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PTPN9P43378 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PTPN9P43378 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PTPN9P43378 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PTPN9P43378 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
PTPN9P43378 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PTPN9P43378 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20.84■□□□□ 0.93
PTPN9P43378 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PTPN9P43378 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
PTPN9P43378 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC20.84■□□□□ 0.93
PTPN9P43378 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PTPN9P43378 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC20.84■□□□□ 0.93
PTPN9P43378 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
PTPN9P43378 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
PTPN9P43378 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC20.84■□□□□ 0.93
PTPN9P43378 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PTPN9P43378 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PTPN9P43378 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PTPN9P43378 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20.84■□□□□ 0.93
PTPN9P43378 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
PTPN9P43378 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PTPN9P43378 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.84■□□□□ 0.93
PTPN9P43378 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
PTPN9P43378 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PTPN9P43378 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PTPN9P43378 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
PTPN9P43378 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
PTPN9P43378 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PTPN9P43378 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PTPN9P43378 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC20.83■□□□□ 0.93
PTPN9P43378 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
PTPN9P43378 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PTPN9P43378 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC20.83■□□□□ 0.93
PTPN9P43378 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.93
PTPN9P43378 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.83■□□□□ 0.93
PTPN9P43378 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PTPN9P43378 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.83■□□□□ 0.93
PTPN9P43378 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC20.83■□□□□ 0.93
PTPN9P43378 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PTPN9P43378 EMC9-206ENST00000560403 872 ntTSL 2 BASIC20.83■□□□□ 0.93
PTPN9P43378 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PTPN9P43378 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
PTPN9P43378 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
PTPN9P43378 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.83■□□□□ 0.92
PTPN9P43378 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
PTPN9P43378 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PTPN9P43378 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.82■□□□□ 0.92
PTPN9P43378 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
PTPN9P43378 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PTPN9P43378 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC20.82■□□□□ 0.92
PTPN9P43378 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC20.82■□□□□ 0.92
PTPN9P43378 MOK-225ENST00000522867 1883 ntTSL 5 BASIC20.82■□□□□ 0.92
PTPN9P43378 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PTPN9P43378 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PTPN9P43378 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
PTPN9P43378 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PTPN9P43378 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PTPN9P43378 GGT1-206ENST00000404223 952 ntTSL 2 BASIC20.82■□□□□ 0.92
PTPN9P43378 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC20.82■□□□□ 0.92
PTPN9P43378 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC20.82■□□□□ 0.92
PTPN9P43378 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
PTPN9P43378 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PTPN9P43378 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC20.82■□□□□ 0.92
PTPN9P43378 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
PTPN9P43378 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PTPN9P43378 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
PTPN9P43378 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PTPN9P43378 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PTPN9P43378 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.82■□□□□ 0.92
PTPN9P43378 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PTPN9P43378 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PTPN9P43378 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
PTPN9P43378 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms