Protein–RNA interactions for Protein: P38798

NMD2, Nonsense-mediated mRNA decay protein 2, yeastyeast

Known RBP Predictions only

Length 1,089 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
NMD2P38798 YMR158W-BYMR158W-B 321 nt1.6□□□□□ -2.15
NMD2P38798 CDC39YCR093W 6327 nt1.6□□□□□ -2.15
NMD2P38798 SMC1YFL008W 3678 nt1.59□□□□□ -2.15
NMD2P38798 snR80snR80 171 nt1.59□□□□□ -2.15
NMD2P38798 tH(GUG)E1tH(GUG)E1 72 nt1.59□□□□□ -2.15
NMD2P38798 tH(GUG)E2tH(GUG)E2 72 nt1.59□□□□□ -2.15
NMD2P38798 tH(GUG)G1tH(GUG)G1 72 nt1.59□□□□□ -2.15
NMD2P38798 tH(GUG)G2tH(GUG)G2 72 nt1.59□□□□□ -2.15
NMD2P38798 tH(GUG)HtH(GUG)H 72 nt1.59□□□□□ -2.15
NMD2P38798 tH(GUG)KtH(GUG)K 72 nt1.59□□□□□ -2.15
NMD2P38798 tH(GUG)MtH(GUG)M 72 nt1.59□□□□□ -2.15
NMD2P38798 YOL155W-AYOL155W-A 135 nt1.59□□□□□ -2.15
NMD2P38798 AHC1YOR023C 1701 nt1.59□□□□□ -2.16
NMD2P38798 ABF2YMR072W 552 nt1.58□□□□□ -2.16
NMD2P38798 IML1YJR138W 4755 nt1.57□□□□□ -2.16
NMD2P38798 snR55snR55 98 nt1.57□□□□□ -2.16
NMD2P38798 tF(GAA)QtF(GAA)Q 75 nt1.57□□□□□ -2.16
NMD2P38798 YMR307C-AYMR307C-A 195 nt1.57□□□□□ -2.16
NMD2P38798 SGF11YPL047W 300 nt1.57□□□□□ -2.16
NMD2P38798 snR74snR74 88 nt1.55□□□□□ -2.16
NMD2P38798 YGR130CYGR130C 2451 nt1.55□□□□□ -2.16
NMD2P38798 YOR072W-BYOR072W-B 162 nt1.54□□□□□ -2.16
NMD2P38798 NPR2YEL062W 1848 nt1.52□□□□□ -2.17
NMD2P38798 PAA1YDR071C 576 nt1.51□□□□□ -2.17
NMD2P38798 NOP9YJL010C 2001 nt1.5□□□□□ -2.17
NMD2P38798 YNL284C-BYNL284C-B 5268 nt1.5□□□□□ -2.17
NMD2P38798 YDR354C-AYDR354C-A 144 nt1.5□□□□□ -2.17
NMD2P38798 CMC4YMR194C-B 222 nt1.5□□□□□ -2.17
NMD2P38798 YNL211CYNL211C 261 nt1.5□□□□□ -2.17
NMD2P38798 KAP120YPL125W 3099 nt1.49□□□□□ -2.17
NMD2P38798 GEA2YEL022W 4380 nt1.49□□□□□ -2.17
NMD2P38798 YIL020C-AYIL020C-A 339 nt1.49□□□□□ -2.17
NMD2P38798 YLL019W-AYLL019W-A 93 nt1.49□□□□□ -2.17
NMD2P38798 RPL33BYOR234C 324 nt1.49□□□□□ -2.17
NMD2P38798 YPL044CYPL044C 549 nt1.49□□□□□ -2.17
NMD2P38798 YIR030W-AYIR030W-A 384 nt1.48□□□□□ -2.17
NMD2P38798 YJL026C-AYJL026C-A 222 nt1.48□□□□□ -2.17
NMD2P38798 APL1YJR005W 2103 nt1.48□□□□□ -2.17
NMD2P38798 RAD9YDR217C 3930 nt1.47□□□□□ -2.17
NMD2P38798 ISD11YER048W-A 285 nt1.46□□□□□ -2.18
NMD2P38798 YAL067W-AYAL067W-A 228 nt1.46□□□□□ -2.18
NMD2P38798 YOR302WYOR302W 78 nt1.46□□□□□ -2.18
NMD2P38798 SPG3YDR504C 384 nt1.44□□□□□ -2.18
NMD2P38798 YBR182C-AYBR182C-A 195 nt1.44□□□□□ -2.18
NMD2P38798 TTI1YKL033W 3117 nt1.44□□□□□ -2.18
NMD2P38798 YKU70YMR284W 1809 nt1.43□□□□□ -2.18
NMD2P38798 NST1YNL091W 3723 nt1.42□□□□□ -2.18
NMD2P38798 YDL196WYDL196W 330 nt1.41□□□□□ -2.18
NMD2P38798 RPL26BYGR034W 384 nt1.41□□□□□ -2.18
NMD2P38798 tV(UAC)BtV(UAC)B 74 nt1.4□□□□□ -2.19
NMD2P38798 tV(UAC)DtV(UAC)D 74 nt1.4□□□□□ -2.19
NMD2P38798 JLP2YMR132C 627 nt1.4□□□□□ -2.19
NMD2P38798 UBP3YER151C 2739 nt1.4□□□□□ -2.19
NMD2P38798 APQ12YIL040W 417 nt1.38□□□□□ -2.19
NMD2P38798 ASE1YOR058C 2658 nt1.37□□□□□ -2.19
NMD2P38798 SIP4YJL089W 2490 nt1.36□□□□□ -2.19
NMD2P38798 YCR018C-AYCR018C-A 255 nt1.35□□□□□ -2.19
NMD2P38798 YFR012W-AYFR012W-A 87 nt1.35□□□□□ -2.19
NMD2P38798 BLI1YKL061W 342 nt1.35□□□□□ -2.19
NMD2P38798 SPT7YBR081C 3999 nt1.35□□□□□ -2.19
NMD2P38798 VAM6YDL077C 3150 nt1.33□□□□□ -2.2
NMD2P38798 PMP1YCR024C-A 123 nt1.33□□□□□ -2.2
NMD2P38798 YMR046W-AYMR046W-A 129 nt1.33□□□□□ -2.2
NMD2P38798 YBR131C-AYBR131C-A 90 nt1.33□□□□□ -2.2
NMD2P38798 YJR029WYJR029W 5268 nt1.33□□□□□ -2.2
NMD2P38798 YPR137C-BYPR137C-B 5268 nt1.33□□□□□ -2.2
NMD2P38798 YPR117WYPR117W 7470 nt1.33□□□□□ -2.2
NMD2P38798 PRP16YKR086W 3216 nt1.32□□□□□ -2.2
NMD2P38798 YDL185C-AYDL185C-A 228 nt1.32□□□□□ -2.2
NMD2P38798 tM(CAU)Q1tM(CAU)Q1 76 nt1.32□□□□□ -2.2
NMD2P38798 STF2YGR008C 255 nt1.32□□□□□ -2.2
NMD2P38798 PAM16YJL104W 450 nt1.32□□□□□ -2.2
NMD2P38798 YNL097C-BYNL097C-B 123 nt1.32□□□□□ -2.2
NMD2P38798 YOR345CYOR345C 351 nt1.32□□□□□ -2.2
NMD2P38798 BFR2YDR299W 1605 nt1.3□□□□□ -2.2
NMD2P38798 ULI1YFR026C 510 nt1.29□□□□□ -2.2
NMD2P38798 YIL134C-AYIL134C-A 204 nt1.29□□□□□ -2.2
NMD2P38798 SCC2YDR180W 4482 nt1.28□□□□□ -2.2
NMD2P38798 SEC8YPR055W 3198 nt1.28□□□□□ -2.2
NMD2P38798 COX12YLR038C 252 nt1.28□□□□□ -2.2
NMD2P38798 RPS30BYOR182C 192 nt1.28□□□□□ -2.2
NMD2P38798 snR190snR190 190 nt1.28□□□□□ -2.2
NMD2P38798 COY1YKL179C 2040 nt1.28□□□□□ -2.2
NMD2P38798 YLR282CYLR282C 342 nt1.27□□□□□ -2.21
NMD2P38798 YDR406W-AYDR406W-A 246 nt1.26□□□□□ -2.21
NMD2P38798 YGL123C-AYGL123C-A 231 nt1.26□□□□□ -2.21
NMD2P38798 YKL100W-AYKL100W-A 90 nt1.26□□□□□ -2.21
NMD2P38798 HUG1YML058W-A 207 nt1.26□□□□□ -2.21
NMD2P38798 YDL073WYDL073W 2955 nt1.26□□□□□ -2.21
NMD2P38798 BUD3YCL014W 4911 nt1.26□□□□□ -2.21
NMD2P38798 COX5BYIL111W 456 nt1.25□□□□□ -2.21
NMD2P38798 HAL9YOL089C 3093 nt1.24□□□□□ -2.21
NMD2P38798 YLR399W-AYLR399W-A 105 nt1.22□□□□□ -2.21
NMD2P38798 YPR160W-AYPR160W-A 81 nt1.22□□□□□ -2.21
NMD2P38798 BEM2YER155C 6504 nt1.22□□□□□ -2.21
NMD2P38798 YOR161W-AYOR161W-A 81 nt1.21□□□□□ -2.22
NMD2P38798 YML002WYML002W 2214 nt1.19□□□□□ -2.22
NMD2P38798 YCR038W-AYCR038W-A 126 nt1.19□□□□□ -2.22
NMD2P38798 YEL014CYEL014C 306 nt1.19□□□□□ -2.22
NMD2P38798 EMT1tM(CAU)D 73 nt1.18□□□□□ -2.22
Retrieved 100 of 7,029 protein–RNA pairs in 42.6 ms