Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL8A1P27658 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL8A1P27658 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC17.53■□□□□ 0.4
COL8A1P27658 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL8A1P27658 MYC-208ENST00000641036 567 ntBASIC17.53■□□□□ 0.4
COL8A1P27658 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
COL8A1P27658 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL8A1P27658 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL8A1P27658 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL8A1P27658 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL8A1P27658 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL8A1P27658 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL8A1P27658 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
COL8A1P27658 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC17.53■□□□□ 0.4
COL8A1P27658 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
COL8A1P27658 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL8A1P27658 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
COL8A1P27658 PGM5P4-201ENST00000421970 445 ntBASIC17.52■□□□□ 0.4
COL8A1P27658 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC17.52■□□□□ 0.4
COL8A1P27658 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL8A1P27658 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC17.52■□□□□ 0.4
COL8A1P27658 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC17.52■□□□□ 0.4
COL8A1P27658 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC17.52■□□□□ 0.4
COL8A1P27658 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL8A1P27658 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL8A1P27658 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
COL8A1P27658 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
COL8A1P27658 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL8A1P27658 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
COL8A1P27658 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL8A1P27658 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC17.51■□□□□ 0.39
COL8A1P27658 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC17.51■□□□□ 0.39
COL8A1P27658 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL8A1P27658 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL8A1P27658 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL8A1P27658 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC17.51■□□□□ 0.39
COL8A1P27658 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL8A1P27658 PRR31-201ENST00000371629 978 ntTSL 2 BASIC17.51■□□□□ 0.39
COL8A1P27658 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL8A1P27658 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC17.51■□□□□ 0.39
COL8A1P27658 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL8A1P27658 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC17.51■□□□□ 0.39
COL8A1P27658 SAPCD2P2-201ENST00000431719 1174 ntBASIC17.51■□□□□ 0.39
COL8A1P27658 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC17.51■□□□□ 0.39
COL8A1P27658 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC17.51■□□□□ 0.39
COL8A1P27658 C2orf69P3-201ENST00000565542 1120 ntBASIC17.51■□□□□ 0.39
COL8A1P27658 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC17.51■□□□□ 0.39
COL8A1P27658 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC17.51■□□□□ 0.39
COL8A1P27658 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC17.51■□□□□ 0.39
COL8A1P27658 AC139887.4-201ENST00000607877 719 ntBASIC17.51■□□□□ 0.39
COL8A1P27658 CLN6-214ENST00000636314 442 ntTSL 3 BASIC17.51■□□□□ 0.39
COL8A1P27658 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL8A1P27658 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
COL8A1P27658 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL8A1P27658 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL8A1P27658 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL8A1P27658 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL8A1P27658 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
COL8A1P27658 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC17.51■□□□□ 0.39
COL8A1P27658 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL8A1P27658 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL8A1P27658 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL8A1P27658 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL8A1P27658 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL8A1P27658 KRT16P1-201ENST00000399124 1418 ntBASIC17.5■□□□□ 0.39
COL8A1P27658 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL8A1P27658 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL8A1P27658 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL8A1P27658 KSR1P1-201ENST00000446298 240 ntBASIC17.5■□□□□ 0.39
COL8A1P27658 AC091390.4-202ENST00000476426 537 ntBASIC17.5■□□□□ 0.39
COL8A1P27658 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC17.5■□□□□ 0.39
COL8A1P27658 CD320-202ENST00000537716 1119 ntTSL 2 BASIC17.5■□□□□ 0.39
COL8A1P27658 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL8A1P27658 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC17.5■□□□□ 0.39
COL8A1P27658 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL8A1P27658 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC17.5■□□□□ 0.39
COL8A1P27658 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC17.5■□□□□ 0.39
COL8A1P27658 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC17.5■□□□□ 0.39
COL8A1P27658 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC17.5■□□□□ 0.39
COL8A1P27658 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
COL8A1P27658 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
COL8A1P27658 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
COL8A1P27658 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
COL8A1P27658 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC17.5■□□□□ 0.39
COL8A1P27658 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL8A1P27658 COMT-203ENST00000403184 2217 ntTSL 2 BASIC17.49■□□□□ 0.39
COL8A1P27658 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL8A1P27658 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL8A1P27658 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL8A1P27658 STK25-205ENST00000405883 1904 ntTSL 2 BASIC17.49■□□□□ 0.39
COL8A1P27658 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL8A1P27658 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL8A1P27658 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
COL8A1P27658 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC17.49■□□□□ 0.39
COL8A1P27658 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL8A1P27658 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
COL8A1P27658 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL8A1P27658 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL8A1P27658 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
COL8A1P27658 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms