Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.92■□□□□ 0.78
MSH3P20585 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
MSH3P20585 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
MSH3P20585 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
MSH3P20585 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
MSH3P20585 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
MSH3P20585 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC19.92■□□□□ 0.78
MSH3P20585 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.92■□□□□ 0.78
MSH3P20585 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC19.92■□□□□ 0.78
MSH3P20585 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC19.92■□□□□ 0.78
MSH3P20585 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
MSH3P20585 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
MSH3P20585 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
MSH3P20585 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
MSH3P20585 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
MSH3P20585 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.91■□□□□ 0.78
MSH3P20585 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.91■□□□□ 0.78
MSH3P20585 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MSH3P20585 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MSH3P20585 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
MSH3P20585 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MSH3P20585 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC19.91■□□□□ 0.78
MSH3P20585 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
MSH3P20585 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC19.91■□□□□ 0.78
MSH3P20585 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
MSH3P20585 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MSH3P20585 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MSH3P20585 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MSH3P20585 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.91■□□□□ 0.78
MSH3P20585 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
MSH3P20585 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
MSH3P20585 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MSH3P20585 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
MSH3P20585 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
MSH3P20585 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.9■□□□□ 0.78
MSH3P20585 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.9■□□□□ 0.78
MSH3P20585 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.9■□□□□ 0.78
MSH3P20585 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
MSH3P20585 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
MSH3P20585 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
MSH3P20585 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
MSH3P20585 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
MSH3P20585 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
MSH3P20585 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC19.9■□□□□ 0.78
MSH3P20585 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
MSH3P20585 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
MSH3P20585 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC19.9■□□□□ 0.78
MSH3P20585 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
MSH3P20585 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.9■□□□□ 0.78
MSH3P20585 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
MSH3P20585 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
MSH3P20585 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
MSH3P20585 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.9■□□□□ 0.78
MSH3P20585 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.9■□□□□ 0.78
MSH3P20585 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.9■□□□□ 0.78
MSH3P20585 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
MSH3P20585 SMG8-203ENST00000578922 2178 ntBASIC19.9■□□□□ 0.78
MSH3P20585 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
MSH3P20585 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.9■□□□□ 0.78
MSH3P20585 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
MSH3P20585 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
MSH3P20585 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
MSH3P20585 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
MSH3P20585 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
MSH3P20585 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.89■□□□□ 0.77
MSH3P20585 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.89■□□□□ 0.77
MSH3P20585 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.89■□□□□ 0.77
MSH3P20585 SERP1-205ENST00000487153 657 ntTSL 4 BASIC19.89■□□□□ 0.77
MSH3P20585 KRT18P6-201ENST00000555540 1265 ntBASIC19.89■□□□□ 0.77
MSH3P20585 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC19.89■□□□□ 0.77
MSH3P20585 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.89■□□□□ 0.77
MSH3P20585 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.89■□□□□ 0.77
MSH3P20585 HLA-B-256ENST00000639848 1089 ntBASIC19.89■□□□□ 0.77
MSH3P20585 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
MSH3P20585 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.88■□□□□ 0.77
MSH3P20585 AIRN-201ENST00000601203 4374 ntBASIC19.88■□□□□ 0.77
MSH3P20585 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSH3P20585 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSH3P20585 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.88■□□□□ 0.77
MSH3P20585 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
MSH3P20585 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSH3P20585 AC092368.3-202ENST00000574180 1591 ntBASIC19.88■□□□□ 0.77
MSH3P20585 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSH3P20585 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSH3P20585 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC19.88■□□□□ 0.77
MSH3P20585 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC19.88■□□□□ 0.77
MSH3P20585 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSH3P20585 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSH3P20585 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.88■□□□□ 0.77
MSH3P20585 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC19.88■□□□□ 0.77
MSH3P20585 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC19.88■□□□□ 0.77
MSH3P20585 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.88■□□□□ 0.77
MSH3P20585 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSH3P20585 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
MSH3P20585 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
MSH3P20585 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.88■□□□□ 0.77
MSH3P20585 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
MSH3P20585 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
MSH3P20585 MOK-233ENST00000524214 1539 ntTSL 2 BASIC19.87■□□□□ 0.77
MSH3P20585 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms