Protein–RNA interactions for Protein: P16234

PDGFRA, Platelet-derived growth factor receptor alpha, humanhuman

Predictions only

Length 1,089 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRAP16234 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
PDGFRAP16234 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC21.02■□□□□ 0.96
PDGFRAP16234 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PDGFRAP16234 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PDGFRAP16234 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PDGFRAP16234 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PDGFRAP16234 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PDGFRAP16234 BET1L-207ENST00000529614 560 ntTSL 5 BASIC21.02■□□□□ 0.96
PDGFRAP16234 KRT18P6-201ENST00000555540 1265 ntBASIC21.02■□□□□ 0.96
PDGFRAP16234 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PDGFRAP16234 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC21.02■□□□□ 0.96
PDGFRAP16234 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PDGFRAP16234 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
PDGFRAP16234 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PDGFRAP16234 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PDGFRAP16234 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
PDGFRAP16234 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PDGFRAP16234 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC21.02■□□□□ 0.96
PDGFRAP16234 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
PDGFRAP16234 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.02■□□□□ 0.95
PDGFRAP16234 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PDGFRAP16234 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
PDGFRAP16234 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PDGFRAP16234 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PDGFRAP16234 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC21.01■□□□□ 0.95
PDGFRAP16234 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PDGFRAP16234 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PDGFRAP16234 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC21.01■□□□□ 0.95
PDGFRAP16234 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
PDGFRAP16234 AC091874.3-201ENST00000512672 1195 ntBASIC21.01■□□□□ 0.95
PDGFRAP16234 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PDGFRAP16234 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PDGFRAP16234 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC21.01■□□□□ 0.95
PDGFRAP16234 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PDGFRAP16234 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC21.01■□□□□ 0.95
PDGFRAP16234 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
PDGFRAP16234 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PDGFRAP16234 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PDGFRAP16234 KRT8P17-201ENST00000453110 1448 ntBASIC21.01■□□□□ 0.95
PDGFRAP16234 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PDGFRAP16234 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
PDGFRAP16234 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC21.01■□□□□ 0.95
PDGFRAP16234 BX119927.1-201ENST00000636596 1552 ntBASIC21.01■□□□□ 0.95
PDGFRAP16234 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PDGFRAP16234 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC21.01■□□□□ 0.95
PDGFRAP16234 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC21■□□□□ 0.95
PDGFRAP16234 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
PDGFRAP16234 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
PDGFRAP16234 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC21■□□□□ 0.95
PDGFRAP16234 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
PDGFRAP16234 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PDGFRAP16234 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21■□□□□ 0.95
PDGFRAP16234 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC21■□□□□ 0.95
PDGFRAP16234 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC21■□□□□ 0.95
PDGFRAP16234 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
PDGFRAP16234 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PDGFRAP16234 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC21■□□□□ 0.95
PDGFRAP16234 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC21■□□□□ 0.95
PDGFRAP16234 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC21■□□□□ 0.95
PDGFRAP16234 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PDGFRAP16234 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC21■□□□□ 0.95
PDGFRAP16234 RHEB-204ENST00000472642 900 ntTSL 3 BASIC21■□□□□ 0.95
PDGFRAP16234 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC21■□□□□ 0.95
PDGFRAP16234 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
PDGFRAP16234 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC21■□□□□ 0.95
PDGFRAP16234 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC21■□□□□ 0.95
PDGFRAP16234 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC21■□□□□ 0.95
PDGFRAP16234 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC21■□□□□ 0.95
PDGFRAP16234 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PDGFRAP16234 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC21■□□□□ 0.95
PDGFRAP16234 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21■□□□□ 0.95
PDGFRAP16234 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC21■□□□□ 0.95
PDGFRAP16234 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PDGFRAP16234 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
PDGFRAP16234 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
PDGFRAP16234 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.99■□□□□ 0.95
PDGFRAP16234 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PDGFRAP16234 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.99■□□□□ 0.95
PDGFRAP16234 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
PDGFRAP16234 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
PDGFRAP16234 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.99■□□□□ 0.95
PDGFRAP16234 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PDGFRAP16234 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
PDGFRAP16234 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
PDGFRAP16234 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
PDGFRAP16234 AC097658.1-201ENST00000475555 843 ntBASIC20.99■□□□□ 0.95
PDGFRAP16234 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC20.99■□□□□ 0.95
PDGFRAP16234 CD99P1-205ENST00000527459 561 ntBASIC20.99■□□□□ 0.95
PDGFRAP16234 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC20.99■□□□□ 0.95
PDGFRAP16234 AL031963.3-201ENST00000606441 850 ntBASIC20.99■□□□□ 0.95
PDGFRAP16234 MYC-209ENST00000641252 345 ntBASIC20.99■□□□□ 0.95
PDGFRAP16234 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
PDGFRAP16234 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
PDGFRAP16234 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
PDGFRAP16234 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
PDGFRAP16234 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PDGFRAP16234 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.99■□□□□ 0.95
PDGFRAP16234 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
PDGFRAP16234 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
PDGFRAP16234 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms