Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
APOEP02649 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.96■□□□□ 0.95
APOEP02649 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.96■□□□□ 0.95
APOEP02649 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
APOEP02649 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC20.96■□□□□ 0.95
APOEP02649 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
APOEP02649 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
APOEP02649 AC092368.3-202ENST00000574180 1591 ntBASIC20.96■□□□□ 0.95
APOEP02649 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC20.96■□□□□ 0.95
APOEP02649 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
APOEP02649 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC20.96■□□□□ 0.95
APOEP02649 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
APOEP02649 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC20.96■□□□□ 0.95
APOEP02649 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC20.96■□□□□ 0.95
APOEP02649 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
APOEP02649 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC20.96■□□□□ 0.95
APOEP02649 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
APOEP02649 AC092720.2-201ENST00000602388 1665 ntBASIC20.96■□□□□ 0.95
APOEP02649 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
APOEP02649 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
APOEP02649 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
APOEP02649 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
APOEP02649 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
APOEP02649 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
APOEP02649 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC20.95■□□□□ 0.94
APOEP02649 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC20.95■□□□□ 0.94
APOEP02649 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
APOEP02649 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
APOEP02649 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC20.95■□□□□ 0.94
APOEP02649 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
APOEP02649 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC20.95■□□□□ 0.94
APOEP02649 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC20.95■□□□□ 0.94
APOEP02649 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.95■□□□□ 0.94
APOEP02649 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
APOEP02649 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
APOEP02649 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC20.95■□□□□ 0.94
APOEP02649 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20.94■□□□□ 0.94
APOEP02649 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
APOEP02649 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.94■□□□□ 0.94
APOEP02649 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
APOEP02649 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20.94■□□□□ 0.94
APOEP02649 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
APOEP02649 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.94■□□□□ 0.94
APOEP02649 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
APOEP02649 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
APOEP02649 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
APOEP02649 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.94■□□□□ 0.94
APOEP02649 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC20.94■□□□□ 0.94
APOEP02649 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC20.94■□□□□ 0.94
APOEP02649 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
APOEP02649 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
APOEP02649 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
APOEP02649 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
APOEP02649 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
APOEP02649 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
APOEP02649 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.94■□□□□ 0.94
APOEP02649 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.94■□□□□ 0.94
APOEP02649 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
APOEP02649 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
APOEP02649 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
APOEP02649 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
APOEP02649 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
APOEP02649 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
APOEP02649 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
APOEP02649 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.93■□□□□ 0.94
APOEP02649 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
APOEP02649 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC20.93■□□□□ 0.94
APOEP02649 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC20.93■□□□□ 0.94
APOEP02649 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC20.93■□□□□ 0.94
APOEP02649 SERP1-205ENST00000487153 657 ntTSL 4 BASIC20.93■□□□□ 0.94
APOEP02649 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
APOEP02649 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC20.93■□□□□ 0.94
APOEP02649 PNMA6B-201ENST00000538162 1200 ntBASIC20.93■□□□□ 0.94
APOEP02649 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
APOEP02649 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC20.93■□□□□ 0.94
APOEP02649 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.93■□□□□ 0.94
APOEP02649 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
APOEP02649 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
APOEP02649 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
APOEP02649 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
APOEP02649 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
APOEP02649 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
APOEP02649 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
APOEP02649 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
APOEP02649 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
APOEP02649 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.92■□□□□ 0.94
APOEP02649 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
APOEP02649 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
APOEP02649 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
APOEP02649 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
APOEP02649 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
APOEP02649 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC20.92■□□□□ 0.94
APOEP02649 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
APOEP02649 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC20.92■□□□□ 0.94
APOEP02649 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
APOEP02649 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
APOEP02649 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC20.92■□□□□ 0.94
APOEP02649 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
APOEP02649 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
APOEP02649 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms