Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC24.7■■□□□ 1.54
COL4A1P02462 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC24.69■■□□□ 1.54
COL4A1P02462 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
COL4A1P02462 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
COL4A1P02462 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC24.69■■□□□ 1.54
COL4A1P02462 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
COL4A1P02462 AP000525.1-201ENST00000608286 694 ntBASIC24.69■■□□□ 1.54
COL4A1P02462 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
COL4A1P02462 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC24.69■■□□□ 1.54
COL4A1P02462 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
COL4A1P02462 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
COL4A1P02462 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC24.69■■□□□ 1.54
COL4A1P02462 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC24.69■■□□□ 1.54
COL4A1P02462 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
COL4A1P02462 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
COL4A1P02462 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC24.69■■□□□ 1.54
COL4A1P02462 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
COL4A1P02462 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
COL4A1P02462 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
COL4A1P02462 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
COL4A1P02462 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC24.68■■□□□ 1.54
COL4A1P02462 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
COL4A1P02462 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC24.68■■□□□ 1.54
COL4A1P02462 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC24.68■■□□□ 1.54
COL4A1P02462 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC24.68■■□□□ 1.54
COL4A1P02462 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
COL4A1P02462 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC24.67■■□□□ 1.54
COL4A1P02462 LINC00565-201ENST00000562710 2331 ntBASIC24.67■■□□□ 1.54
COL4A1P02462 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC24.67■■□□□ 1.54
COL4A1P02462 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
COL4A1P02462 NIFKP9-201ENST00000419265 221 ntBASIC24.67■■□□□ 1.54
COL4A1P02462 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC24.67■■□□□ 1.54
COL4A1P02462 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
COL4A1P02462 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
COL4A1P02462 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC24.66■■□□□ 1.54
COL4A1P02462 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
COL4A1P02462 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC24.66■■□□□ 1.54
COL4A1P02462 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC24.66■■□□□ 1.54
COL4A1P02462 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC24.66■■□□□ 1.54
COL4A1P02462 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC24.66■■□□□ 1.54
COL4A1P02462 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC24.66■■□□□ 1.54
COL4A1P02462 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
COL4A1P02462 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC24.66■■□□□ 1.54
COL4A1P02462 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC24.66■■□□□ 1.54
COL4A1P02462 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
COL4A1P02462 AL353807.1-201ENST00000427475 662 ntBASIC24.66■■□□□ 1.54
COL4A1P02462 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC24.66■■□□□ 1.54
COL4A1P02462 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC24.66■■□□□ 1.54
COL4A1P02462 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC24.66■■□□□ 1.54
COL4A1P02462 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
COL4A1P02462 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC24.65■■□□□ 1.54
COL4A1P02462 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
COL4A1P02462 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
COL4A1P02462 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC24.65■■□□□ 1.54
COL4A1P02462 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC24.65■■□□□ 1.54
COL4A1P02462 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
COL4A1P02462 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
COL4A1P02462 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
COL4A1P02462 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
COL4A1P02462 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
COL4A1P02462 FP700111.2-201ENST00000619190 1892 ntBASIC24.65■■□□□ 1.54
COL4A1P02462 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC24.65■■□□□ 1.54
COL4A1P02462 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC24.65■■□□□ 1.54
COL4A1P02462 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
COL4A1P02462 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC24.65■■□□□ 1.54
COL4A1P02462 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC24.64■■□□□ 1.54
COL4A1P02462 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC24.64■■□□□ 1.54
COL4A1P02462 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC24.64■■□□□ 1.53
COL4A1P02462 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
COL4A1P02462 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC24.64■■□□□ 1.53
COL4A1P02462 BID-203ENST00000399765 1879 ntTSL 2 BASIC24.64■■□□□ 1.53
COL4A1P02462 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
COL4A1P02462 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
COL4A1P02462 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
COL4A1P02462 CYP2D8P-201ENST00000433633 1490 ntBASIC24.63■■□□□ 1.53
COL4A1P02462 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC24.63■■□□□ 1.53
COL4A1P02462 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC24.63■■□□□ 1.53
COL4A1P02462 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC24.63■■□□□ 1.53
COL4A1P02462 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC24.63■■□□□ 1.53
COL4A1P02462 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC24.63■■□□□ 1.53
COL4A1P02462 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC24.63■■□□□ 1.53
COL4A1P02462 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC24.63■■□□□ 1.53
COL4A1P02462 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC24.63■■□□□ 1.53
COL4A1P02462 C1QL1P1-201ENST00000568105 661 ntBASIC24.63■■□□□ 1.53
COL4A1P02462 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC24.63■■□□□ 1.53
COL4A1P02462 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC24.63■■□□□ 1.53
COL4A1P02462 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC24.63■■□□□ 1.53
COL4A1P02462 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
COL4A1P02462 KRT8P20-201ENST00000423953 1409 ntBASIC24.63■■□□□ 1.53
COL4A1P02462 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC24.63■■□□□ 1.53
COL4A1P02462 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC24.63■■□□□ 1.53
COL4A1P02462 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC24.63■■□□□ 1.53
COL4A1P02462 DPP3P2-201ENST00000416030 1696 ntBASIC24.63■■□□□ 1.53
COL4A1P02462 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
COL4A1P02462 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC24.62■■□□□ 1.53
COL4A1P02462 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC24.62■■□□□ 1.53
COL4A1P02462 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC24.62■■□□□ 1.53
COL4A1P02462 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC24.62■■□□□ 1.53
COL4A1P02462 RBM42-202ENST00000586618 771 ntTSL 3 BASIC24.62■■□□□ 1.53
COL4A1P02462 AC073195.1-201ENST00000607241 877 ntBASIC24.62■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms