Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 C15orf39-201ENST00000360639 4517 ntAPPRIS P2 TSL 2 BASIC12.08□□□□□ -0.482e-7■■■■■ 146.5
SF3B1O75533 PPCDC-209ENST00000568207 1127 ntTSL 211.76□□□□□ -0.532e-6■■■■■ 146.5
SF3B1O75533 EPB41L2-224ENST00000530481 3914 ntAPPRIS ALT2 TSL 2 BASIC11.41□□□□□ -0.584e-6■■■■■ 146.5
SF3B1O75533 MYO1C-204ENST00000545534 3676 ntTSL 2 BASIC11.23□□□□□ -0.612e-7■■■■■ 146.5
SF3B1O75533 EPB41L2-232ENST00000628542 4247 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.624e-6■■■■■ 146.5
SF3B1O75533 RSRC1-206ENST00000471994 769 ntTSL 510.86□□□□□ -0.672e-6■■■■■ 146.5
SF3B1O75533 PPCDC-203ENST00000562192 313 ntTSL 410.73□□□□□ -0.692e-6■■■■■ 146.5
SF3B1O75533 RSRC1-201ENST00000295930 1727 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.722e-6■■■■■ 146.5
SF3B1O75533 RSRC1-215ENST00000611884 1738 ntAPPRIS P1 TSL 5 BASIC10.57□□□□□ -0.722e-6■■■■■ 146.5
SF3B1O75533 EPB41L2-201ENST00000337057 4457 ntAPPRIS P3 TSL 1 (best) BASIC10.51□□□□□ -0.734e-6■■■■■ 146.5
SF3B1O75533 EPB41L2-216ENST00000527411 4186 ntAPPRIS ALT2 TSL 5 BASIC10.4□□□□□ -0.754e-6■■■■■ 146.5
SF3B1O75533 RSRC1-210ENST00000480119 1335 ntTSL 510.29□□□□□ -0.762e-6■■■■■ 146.5
SF3B1O75533 RSRC1-202ENST00000312179 1443 ntTSL 1 (best) BASIC9.9□□□□□ -0.822e-6■■■■■ 146.5
SF3B1O75533 LINC02405-202ENST00000540244 689 ntTSL 39.86□□□□□ -0.832e-7■■■■■ 146.5
SF3B1O75533 RSRC1-205ENST00000471911 931 ntTSL 29.54□□□□□ -0.882e-6■■■■■ 146.5
SF3B1O75533 PPCDC-202ENST00000562095 334 ntTSL 29.02□□□□□ -0.972e-6■■■■■ 146.5
SF3B1O75533 MANBA-207ENST00000514430 7444 ntTSL 28.53□□□□□ -1.042e-7■■■■■ 146.5
SF3B1O75533 CSF1-209ENST00000527192 577 ntTSL 48.15□□□□□ -1.12e-7■■■■■ 146.5
SF3B1O75533 RSRC1-203ENST00000464171 2411 ntTSL 5 BASIC7.9□□□□□ -1.142e-6■■■■■ 146.5
SF3B1O75533 ATP6V0D1-215ENST00000568101 552 ntTSL 47.89□□□□□ -1.152e-6■■■■■ 146.5
SF3B1O75533 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC6.69□□□□□ -1.342e-6■■■■■ 146.5
SF3B1O75533 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC5.89□□□□□ -1.472e-6■■■■■ 146.5
SF3B1O75533 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC18.95■□□□□ 0.626e-7■■■■■ 146.4
SF3B1O75533 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.55■□□□□ 0.46e-7■■■■■ 146.4
SF3B1O75533 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC17.48■□□□□ 0.396e-7■■■■■ 146.4
SF3B1O75533 POLR3E-219ENST00000615879 3655 ntTSL 2 BASIC12.55□□□□□ -0.46e-7■■■■■ 146.4
SF3B1O75533 POLR3E-201ENST00000299853 3697 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.416e-7■■■■■ 146.4
SF3B1O75533 POLR3E-208ENST00000564061 4800 ntTSL 1 (best)12.49□□□□□ -0.416e-7■■■■■ 146.4
SF3B1O75533 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC29.36■■■□□ 2.292e-6■■■■■ 146.3
SF3B1O75533 PASK-201ENST00000234040 4572 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.115e-6■■■■■ 146.2
SF3B1O75533 PASK-204ENST00000405260 4942 ntAPPRIS P3 TSL 5 BASIC13.72□□□□□ -0.215e-6■■■■■ 146.2
SF3B1O75533 PASK-203ENST00000403638 5161 ntTSL 1 (best) BASIC13.6□□□□□ -0.235e-6■■■■■ 146.2
SF3B1O75533 PASK-202ENST00000358649 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.495e-6■■■■■ 146.2
SF3B1O75533 PASK-215ENST00000544142 4724 ntAPPRIS P3 TSL 5 BASIC11.56□□□□□ -0.565e-6■■■■■ 146.2
SF3B1O75533 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC16.19■□□□□ 0.181e-6■■■■■ 146.1
SF3B1O75533 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC15.95■□□□□ 0.141e-6■■■■■ 146.1
SF3B1O75533 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.041e-6■■■■■ 146.1
SF3B1O75533 ACSL1-210ENST00000513317 2469 ntAPPRIS ALT1 TSL 2 BASIC12.07□□□□□ -0.481e-6■■■■■ 146.1
SF3B1O75533 ACSL1-204ENST00000504342 2333 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.541e-6■■■■■ 146.1
SF3B1O75533 ACSL1-207ENST00000506733 2646 ntTSL 211.28□□□□□ -0.61e-6■■■■■ 146.1
SF3B1O75533 ACSL1-212ENST00000622937 4103 ntTSL 2 BASIC8.55□□□□□ -1.041e-6■■■■■ 146.1
SF3B1O75533 ACSL1-211ENST00000515030 3948 ntAPPRIS P3 TSL 5 BASIC8.36□□□□□ -1.071e-6■■■■■ 146.1
SF3B1O75533 FAM207A-203ENST00000458015 643 ntTSL 521.93■■□□□ 1.17e-8■■■■■ 146.1
SF3B1O75533 DNAJC17-204ENST00000559238 1341 ntTSL 517.99■□□□□ 0.477e-8■■■■■ 146.1
SF3B1O75533 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.92■□□□□ 0.464e-7■■■■■ 145.9
SF3B1O75533 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.434e-7■■■■■ 145.9
SF3B1O75533 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC16.91■□□□□ 0.33e-6■■■■■ 145.9
SF3B1O75533 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.284e-7■■■■■ 145.9
SF3B1O75533 INO80D-203ENST00000424117 1664 ntTSL 58.72□□□□□ -1.013e-6■■■■■ 145.9
SF3B1O75533 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.443e-6■■■■■ 145.9
SF3B1O75533 CCDC93-201ENST00000319432 6896 ntAPPRIS ALT1 TSL 5 BASIC7.41□□□□□ -1.223e-7■■■■■ 145.8
SF3B1O75533 CCDC93-202ENST00000376300 6899 ntAPPRIS P2 TSL 1 (best) BASIC7.41□□□□□ -1.223e-7■■■■■ 145.8
SF3B1O75533 CCNT2-210ENST00000475094 606 ntTSL 216.38■□□□□ 0.212e-6■■■■■ 145.5
SF3B1O75533 CCNT2-203ENST00000417175 811 ntTSL 314.77□□□□□ -0.042e-6■■■■■ 145.5
SF3B1O75533 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC6.12□□□□□ -1.431e-8■■■■■ 145.5
SF3B1O75533 ANXA11-201ENST00000265447 2526 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.182e-6■■■■■ 145.4
SF3B1O75533 SPTLC2-203ENST00000554901 1518 ntTSL 1 (best)17.68■□□□□ 0.424e-6■■■■■ 145.4
SF3B1O75533 SGK494-203ENST00000469832 602 ntTSL 316.69■□□□□ 0.264e-6■■■■■ 145.4
SF3B1O75533 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC15.53■□□□□ 0.082e-6■■■■■ 145.4
SF3B1O75533 XAB2-202ENST00000595288 4555 ntTSL 215.52■□□□□ 0.072e-6■■■■■ 145.4
SF3B1O75533 TCF7L2-223ENST00000629706 1755 ntTSL 1 (best) BASIC12.39□□□□□ -0.436e-9■■■■■ 145.4
SF3B1O75533 TCF7L2-205ENST00000355717 1979 ntTSL 1 (best) BASIC9.83□□□□□ -0.846e-9■■■■■ 145.4
SF3B1O75533 TCF7L2-204ENST00000352065 1553 ntAPPRIS ALT1 TSL 1 (best) BASIC9.67□□□□□ -0.866e-9■■■■■ 145.4
SF3B1O75533 TCF7L2-221ENST00000545257 2160 ntTSL 1 (best) BASIC9.32□□□□□ -0.926e-9■■■■■ 145.4
SF3B1O75533 TCF7L2-216ENST00000534894 3778 ntTSL 1 (best) BASIC8.99□□□□□ -0.976e-9■■■■■ 145.4
SF3B1O75533 TCF7L2-209ENST00000369395 1541 ntTSL 1 (best) BASIC8.45□□□□□ -1.066e-9■■■■■ 145.4
SF3B1O75533 MIR4435-2HG-219ENST00000609220 883 ntTSL 3 BASIC8.02□□□□□ -1.132e-6■■■■■ 145.4
SF3B1O75533 SPTLC2-206ENST00000557566 510 ntTSL 27.52□□□□□ -1.24e-6■■■■■ 145.4
SF3B1O75533 TCF7L2-202ENST00000346198 667 ntTSL 37.49□□□□□ -1.216e-9■■■■■ 145.4
SF3B1O75533 TCF7L2-220ENST00000543371 4037 ntTSL 1 (best) BASIC7.22□□□□□ -1.256e-9■■■■■ 145.4
SF3B1O75533 TCF7L2-218ENST00000538897 4000 ntTSL 1 (best) BASIC7.15□□□□□ -1.266e-9■■■■■ 145.4
SF3B1O75533 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC6.76□□□□□ -1.336e-9■■■■■ 145.4
SF3B1O75533 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC6.17□□□□□ -1.426e-9■■■■■ 145.4
SF3B1O75533 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC6.11□□□□□ -1.436e-9■■■■■ 145.4
SF3B1O75533 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC5.98□□□□□ -1.456e-9■■■■■ 145.4
SF3B1O75533 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.75□□□□□ -1.496e-9■■■■■ 145.4
SF3B1O75533 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.17□□□□□ -2.062e-6■■■■■ 145.4
SF3B1O75533 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC33■■■□□ 2.873e-6■■■■■ 145.3
SF3B1O75533 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC32■■■□□ 2.713e-6■■■■■ 145.3
SF3B1O75533 ZCWPW1-203ENST00000464510 1300 ntTSL 223.07■■□□□ 1.283e-6■■■■■ 145.3
SF3B1O75533 ZCWPW1-205ENST00000472716 617 ntTSL 421.56■■□□□ 1.043e-6■■■■■ 145.3
SF3B1O75533 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.653e-6■■■■■ 145.3
SF3B1O75533 NT5DC2-215ENST00000492555 2004 ntTSL 1 (best)18.55■□□□□ 0.563e-6■■■■■ 145.3
SF3B1O75533 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.533e-6■■■■■ 145.3
SF3B1O75533 NT5DC2-213ENST00000489316 772 ntTSL 517.34■□□□□ 0.373e-6■■■■■ 145.3
SF3B1O75533 NT5DC2-201ENST00000307076 2047 ntAPPRIS P3 TSL 2 BASIC12.81□□□□□ -0.363e-6■■■■■ 145.3
SF3B1O75533 SGSM3-201ENST00000248929 2969 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.211e-6■■■■■ 145.3
SF3B1O75533 SGSM3-213ENST00000485962 2973 ntTSL 512.53□□□□□ -0.41e-6■■■■■ 145.3
SF3B1O75533 ASPH-203ENST00000379454 5268 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.439e-8■■■■■ 145.1
SF3B1O75533 ASPH-230ENST00000541428 2550 ntAPPRIS ALT2 TSL 2 BASIC9.18□□□□□ -0.949e-8■■■■■ 145.1
SF3B1O75533 ASPH-223ENST00000522349 531 ntTSL 55.1□□□□□ -1.599e-8■■■■■ 145.1
SF3B1O75533 ASPH-228ENST00000523927 556 ntTSL 43.04□□□□□ -1.929e-8■■■■■ 145.1
SF3B1O75533 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.333e-8■■■■■ 144.8
SF3B1O75533 DENND1B-202ENST00000294737 3043 ntTSL 218.76■□□□□ 0.593e-8■■■■■ 144.8
SF3B1O75533 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.13e-8■■■■■ 144.8
SF3B1O75533 DENND1B-201ENST00000235453 2195 ntAPPRIS ALT2 TSL 1 (best) BASIC10.45□□□□□ -0.743e-8■■■■■ 144.8
SF3B1O75533 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC26.76■■□□□ 1.873e-6■■■■■ 144.8
SF3B1O75533 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC20.16■□□□□ 0.823e-6■■■■■ 144.8
SF3B1O75533 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC19.33■□□□□ 0.683e-6■■■■■ 144.8
SF3B1O75533 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC19.06■□□□□ 0.643e-6■■■■■ 144.8
Retrieved 100 of 46,956 protein–RNA pairs in 1628.4 ms