Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM38O00635 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM38O00635 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM38O00635 SLC29A4P2-201ENST00000504749 1089 ntBASIC20.11■□□□□ 0.81
TRIM38O00635 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
TRIM38O00635 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC20.11■□□□□ 0.81
TRIM38O00635 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
TRIM38O00635 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM38O00635 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
TRIM38O00635 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM38O00635 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM38O00635 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM38O00635 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM38O00635 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.11■□□□□ 0.81
TRIM38O00635 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
TRIM38O00635 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM38O00635 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM38O00635 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM38O00635 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC20.11■□□□□ 0.81
TRIM38O00635 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRIM38O00635 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
TRIM38O00635 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM38O00635 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM38O00635 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.1■□□□□ 0.81
TRIM38O00635 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM38O00635 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC20.1■□□□□ 0.81
TRIM38O00635 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC20.1■□□□□ 0.81
TRIM38O00635 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20.1■□□□□ 0.81
TRIM38O00635 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM38O00635 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM38O00635 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC20.1■□□□□ 0.81
TRIM38O00635 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM38O00635 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
TRIM38O00635 C1QBPP2-201ENST00000528754 825 ntBASIC20.1■□□□□ 0.81
TRIM38O00635 RNF121-214ENST00000533380 870 ntTSL 3 BASIC20.1■□□□□ 0.81
TRIM38O00635 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
TRIM38O00635 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.1■□□□□ 0.81
TRIM38O00635 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.1■□□□□ 0.81
TRIM38O00635 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM38O00635 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
TRIM38O00635 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM38O00635 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM38O00635 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM38O00635 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
TRIM38O00635 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM38O00635 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM38O00635 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM38O00635 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM38O00635 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRIM38O00635 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20.09■□□□□ 0.81
TRIM38O00635 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRIM38O00635 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TRIM38O00635 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC20.09■□□□□ 0.81
TRIM38O00635 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.09■□□□□ 0.81
TRIM38O00635 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC20.09■□□□□ 0.81
TRIM38O00635 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRIM38O00635 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC20.09■□□□□ 0.81
TRIM38O00635 KRT17P3-201ENST00000420566 1262 ntBASIC20.09■□□□□ 0.81
TRIM38O00635 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC20.09■□□□□ 0.81
TRIM38O00635 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TRIM38O00635 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRIM38O00635 SOX15-203ENST00000570788 1093 ntBASIC20.09■□□□□ 0.81
TRIM38O00635 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC20.09■□□□□ 0.81
TRIM38O00635 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRIM38O00635 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRIM38O00635 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.09■□□□□ 0.81
TRIM38O00635 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
TRIM38O00635 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRIM38O00635 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.09■□□□□ 0.81
TRIM38O00635 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRIM38O00635 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.09■□□□□ 0.81
TRIM38O00635 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TRIM38O00635 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TRIM38O00635 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
TRIM38O00635 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC20.08■□□□□ 0.81
TRIM38O00635 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
TRIM38O00635 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
TRIM38O00635 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.08■□□□□ 0.81
TRIM38O00635 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.08■□□□□ 0.81
TRIM38O00635 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.08■□□□□ 0.81
TRIM38O00635 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TRIM38O00635 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TRIM38O00635 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TRIM38O00635 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC20.08■□□□□ 0.81
TRIM38O00635 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC20.08■□□□□ 0.81
TRIM38O00635 OR2A1-AS1-207ENST00000486094 819 ntBASIC20.08■□□□□ 0.81
TRIM38O00635 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
TRIM38O00635 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
TRIM38O00635 REXO2-208ENST00000539754 791 ntTSL 2 BASIC20.08■□□□□ 0.81
TRIM38O00635 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC20.08■□□□□ 0.81
TRIM38O00635 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
TRIM38O00635 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC20.08■□□□□ 0.81
TRIM38O00635 RN7SL471P-201ENST00000580476 299 ntBASIC20.08■□□□□ 0.81
TRIM38O00635 FAM197Y4-202ENST00000622692 608 ntBASIC20.08■□□□□ 0.81
TRIM38O00635 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.08■□□□□ 0.81
TRIM38O00635 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC20.08■□□□□ 0.81
TRIM38O00635 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
TRIM38O00635 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
TRIM38O00635 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
TRIM38O00635 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms