Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC18.64■□□□□ 0.57
HMGN4O00479 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC18.64■□□□□ 0.57
HMGN4O00479 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HMGN4O00479 MDK-213ENST00000617138 635 ntTSL 2 BASIC18.64■□□□□ 0.57
HMGN4O00479 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGN4O00479 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGN4O00479 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC18.64■□□□□ 0.57
HMGN4O00479 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGN4O00479 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HMGN4O00479 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC18.64■□□□□ 0.57
HMGN4O00479 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC18.64■□□□□ 0.57
HMGN4O00479 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGN4O00479 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HMGN4O00479 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGN4O00479 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
HMGN4O00479 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGN4O00479 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HMGN4O00479 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC18.63■□□□□ 0.57
HMGN4O00479 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGN4O00479 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGN4O00479 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGN4O00479 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC18.63■□□□□ 0.57
HMGN4O00479 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
HMGN4O00479 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.63■□□□□ 0.57
HMGN4O00479 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC18.63■□□□□ 0.57
HMGN4O00479 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC18.63■□□□□ 0.57
HMGN4O00479 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.63■□□□□ 0.57
HMGN4O00479 OR10C1-204ENST00000622521 1039 ntBASIC18.63■□□□□ 0.57
HMGN4O00479 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC18.63■□□□□ 0.57
HMGN4O00479 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGN4O00479 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HMGN4O00479 AC010980.2-201ENST00000587099 1412 ntBASIC18.63■□□□□ 0.57
HMGN4O00479 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
HMGN4O00479 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC18.63■□□□□ 0.57
HMGN4O00479 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HMGN4O00479 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC18.63■□□□□ 0.57
HMGN4O00479 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC18.63■□□□□ 0.57
HMGN4O00479 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
HMGN4O00479 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HMGN4O00479 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HMGN4O00479 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC18.62■□□□□ 0.57
HMGN4O00479 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGN4O00479 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGN4O00479 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HMGN4O00479 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGN4O00479 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.62■□□□□ 0.57
HMGN4O00479 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGN4O00479 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HMGN4O00479 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGN4O00479 METTL26-203ENST00000397664 604 ntTSL 2 BASIC18.62■□□□□ 0.57
HMGN4O00479 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGN4O00479 AL031963.3-201ENST00000606441 850 ntBASIC18.62■□□□□ 0.57
HMGN4O00479 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
HMGN4O00479 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HMGN4O00479 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGN4O00479 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGN4O00479 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGN4O00479 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
HMGN4O00479 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC18.62■□□□□ 0.57
HMGN4O00479 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.62■□□□□ 0.57
HMGN4O00479 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.62■□□□□ 0.57
HMGN4O00479 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGN4O00479 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HMGN4O00479 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HMGN4O00479 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGN4O00479 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGN4O00479 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HMGN4O00479 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HMGN4O00479 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGN4O00479 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
HMGN4O00479 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC18.61■□□□□ 0.57
HMGN4O00479 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
HMGN4O00479 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HMGN4O00479 AC004911.1-201ENST00000416316 871 ntBASIC18.61■□□□□ 0.57
HMGN4O00479 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC18.61■□□□□ 0.57
HMGN4O00479 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC18.61■□□□□ 0.57
HMGN4O00479 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC18.61■□□□□ 0.57
HMGN4O00479 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGN4O00479 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HMGN4O00479 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGN4O00479 GOLGA2P11-201ENST00000562660 1621 ntBASIC18.6■□□□□ 0.57
HMGN4O00479 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGN4O00479 KRT8P20-201ENST00000423953 1409 ntBASIC18.6■□□□□ 0.57
HMGN4O00479 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGN4O00479 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HMGN4O00479 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC18.6■□□□□ 0.57
HMGN4O00479 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGN4O00479 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGN4O00479 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HMGN4O00479 AC093787.1-201ENST00000450396 207 ntBASIC18.6■□□□□ 0.57
HMGN4O00479 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC18.6■□□□□ 0.57
HMGN4O00479 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HMGN4O00479 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC18.6■□□□□ 0.57
HMGN4O00479 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC18.6■□□□□ 0.57
HMGN4O00479 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC18.6■□□□□ 0.57
HMGN4O00479 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC18.6■□□□□ 0.57
HMGN4O00479 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HMGN4O00479 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
HMGN4O00479 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HMGN4O00479 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms