Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 MTHFD1L-212ENST00000618312 3159 ntTSL 5 BASIC8.13□□□□□ -1.11
MSX1P28360 RPS4XP5-202ENST00000449995 1334 ntBASIC8.13□□□□□ -1.11
MSX1P28360 OR8G3P-203ENST00000641848 1344 ntBASIC8.13□□□□□ -1.11
MSX1P28360 ZNF100-202ENST00000358296 5745 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
MSX1P28360 AC087359.1-201ENST00000508335 1740 ntBASIC8.13□□□□□ -1.11
MSX1P28360 ADH1C-204ENST00000515683 1740 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
MSX1P28360 CHD2-212ENST00000627622 1740 ntTSL 2 BASIC8.13□□□□□ -1.11
MSX1P28360 ADGRB3-202ENST00000370598 6010 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
MSX1P28360 VPREB1-201ENST00000302273 626 ntAPPRIS ALT2 TSL 3 BASIC8.13□□□□□ -1.11
MSX1P28360 IL17F-201ENST00000336123 850 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
MSX1P28360 RNU4-76P-201ENST00000364509 141 ntBASIC8.13□□□□□ -1.11
MSX1P28360 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC8.13□□□□□ -1.11
MSX1P28360 FRG1JP-201ENST00000376334 931 ntBASIC8.13□□□□□ -1.11
MSX1P28360 RNU6-413P-201ENST00000384115 107 ntBASIC8.13□□□□□ -1.11
MSX1P28360 IGHV1-24-201ENST00000390610 411 ntAPPRIS P1 BASIC8.13□□□□□ -1.11
MSX1P28360 MCTS2P-201ENST00000394552 546 ntBASIC8.13□□□□□ -1.11
MSX1P28360 ATF1P1-201ENST00000406040 927 ntBASIC8.13□□□□□ -1.11
MSX1P28360 AL645937.5-202ENST00000415595 944 ntBASIC8.13□□□□□ -1.11
MSX1P28360 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC8.13□□□□□ -1.11
MSX1P28360 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC8.13□□□□□ -1.11
MSX1P28360 CDY14P-201ENST00000431260 1014 ntBASIC8.13□□□□□ -1.11
MSX1P28360 AC245452.2-201ENST00000435222 392 ntBASIC8.13□□□□□ -1.11
MSX1P28360 AC013410.1-201ENST00000436223 1232 ntBASIC8.13□□□□□ -1.11
MSX1P28360 AL356498.1-201ENST00000443334 334 ntBASIC8.13□□□□□ -1.11
MSX1P28360 AC002064.1-201ENST00000445784 733 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
MSX1P28360 MRPS25-205ENST00000449354 1119 ntTSL 2 BASIC8.13□□□□□ -1.11
MSX1P28360 CDY23P-201ENST00000451661 1014 ntBASIC8.13□□□□□ -1.11
MSX1P28360 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC8.13□□□□□ -1.11
MSX1P28360 RN7SL223P-201ENST00000470401 294 ntBASIC8.13□□□□□ -1.11
MSX1P28360 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC8.13□□□□□ -1.11
MSX1P28360 AC084017.1-201ENST00000483240 860 ntBASIC8.13□□□□□ -1.11
MSX1P28360 AL024509.2-201ENST00000493462 493 ntBASIC8.13□□□□□ -1.11
MSX1P28360 RN7SL538P-201ENST00000494227 304 ntBASIC8.13□□□□□ -1.11
MSX1P28360 AC090058.1-201ENST00000498788 435 ntBASIC8.13□□□□□ -1.11
MSX1P28360 BNIP3P41-201ENST00000503774 571 ntBASIC8.13□□□□□ -1.11
MSX1P28360 RPL37P25-201ENST00000507308 276 ntBASIC8.13□□□□□ -1.11
MSX1P28360 AC097375.1-201ENST00000507949 488 ntTSL 3 BASIC8.13□□□□□ -1.11
MSX1P28360 AC017007.5-201ENST00000511590 874 ntTSL 2 BASIC8.13□□□□□ -1.11
MSX1P28360 AC024022.1-203ENST00000515392 478 ntTSL 3 BASIC8.13□□□□□ -1.11
MSX1P28360 NPM1P52-201ENST00000518264 846 ntBASIC8.13□□□□□ -1.11
MSX1P28360 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC8.13□□□□□ -1.11
MSX1P28360 AP001973.1-201ENST00000530177 572 ntTSL 4 BASIC8.13□□□□□ -1.11
MSX1P28360 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC8.13□□□□□ -1.11
MSX1P28360 PRR13P2-201ENST00000533804 406 ntBASIC8.13□□□□□ -1.11
MSX1P28360 AC087241.3-201ENST00000542076 862 ntTSL 2 BASIC8.13□□□□□ -1.11
MSX1P28360 AC084033.3-201ENST00000551421 451 ntTSL 2 BASIC8.13□□□□□ -1.11
MSX1P28360 AC084033.2-201ENST00000551532 967 ntBASIC8.13□□□□□ -1.11
MSX1P28360 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC8.13□□□□□ -1.11
MSX1P28360 AC009063.2-201ENST00000563981 906 ntTSL 3 BASIC8.13□□□□□ -1.11
MSX1P28360 AC009120.2-203ENST00000565313 539 ntTSL 3 BASIC8.13□□□□□ -1.11
MSX1P28360 PWRN1-207ENST00000565893 818 ntTSL 3 BASIC8.13□□□□□ -1.11
MSX1P28360 NDUFA5P11-201ENST00000567995 343 ntBASIC8.13□□□□□ -1.11
MSX1P28360 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC8.13□□□□□ -1.11
MSX1P28360 MTND1P15-201ENST00000579262 949 ntBASIC8.13□□□□□ -1.11
MSX1P28360 AC080037.1-201ENST00000584975 889 ntTSL 3 BASIC8.13□□□□□ -1.11
MSX1P28360 AC008736.1-201ENST00000592431 568 ntTSL 2 BASIC8.13□□□□□ -1.11
MSX1P28360 ZNF615-206ENST00000597747 704 ntTSL 5 BASIC8.13□□□□□ -1.11
MSX1P28360 AC009237.13-201ENST00000603193 276 ntBASIC8.13□□□□□ -1.11
MSX1P28360 AL022345.3-201ENST00000611406 228 ntBASIC8.13□□□□□ -1.11
MSX1P28360 GLTP-206ENST00000617457 969 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
MSX1P28360 AC141557.2-201ENST00000621330 482 ntBASIC8.13□□□□□ -1.11
MSX1P28360 AC008443.7-201ENST00000622195 246 ntBASIC8.13□□□□□ -1.11
MSX1P28360 AC004009.2-201ENST00000623016 728 ntBASIC8.13□□□□□ -1.11
MSX1P28360 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC8.13□□□□□ -1.11
MSX1P28360 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC8.13□□□□□ -1.11
MSX1P28360 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC8.13□□□□□ -1.11
MSX1P28360 USP17L21-202ENST00000621388 1677 ntAPPRIS ALT2 TSL 5 BASIC8.13□□□□□ -1.11
MSX1P28360 LINC01719-204ENST00000611275 2054 ntTSL 5 BASIC8.13□□□□□ -1.11
MSX1P28360 NCKAP1-202ENST00000361354 20347 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
MSX1P28360 CAST-204ENST00000341926 2487 ntAPPRIS ALT2 TSL 1 (best) BASIC8.13□□□□□ -1.11
MSX1P28360 MTND5P17-201ENST00000418405 1603 ntBASIC8.13□□□□□ -1.11
MSX1P28360 KCNA2-215ENST00000640956 1584 ntTSL 5 BASIC8.13□□□□□ -1.11
MSX1P28360 CBFA2T2-210ENST00000543126 3502 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
MSX1P28360 FCRL4-201ENST00000271532 3459 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
MSX1P28360 TRPM3-210ENST00000377111 4618 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
MSX1P28360 CACNA1D-201ENST00000288139 9341 ntAPPRIS P3 TSL 1 (best) BASIC8.13□□□□□ -1.11
MSX1P28360 DOCK11-202ENST00000276204 6664 ntAPPRIS ALT1 TSL 5 BASIC8.13□□□□□ -1.11
MSX1P28360 KIAA0391-205ENST00000603544 2232 ntTSL 5 BASIC8.13□□□□□ -1.11
MSX1P28360 AL445665.1-201ENST00000322495 2599 ntTSL 2 BASIC8.13□□□□□ -1.11
MSX1P28360 PDLIM5-222ENST00000615540 6219 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
MSX1P28360 TPP2-202ENST00000376065 3931 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
MSX1P28360 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC8.12□□□□□ -1.11
MSX1P28360 COL28A1-201ENST00000399429 4277 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
MSX1P28360 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC8.12□□□□□ -1.11
MSX1P28360 PARP9-201ENST00000360356 3198 ntAPPRIS P3 TSL 1 (best) BASIC8.12□□□□□ -1.11
MSX1P28360 ATG2B-202ENST00000359933 13684 ntAPPRIS P1 TSL 5 BASIC8.12□□□□□ -1.11
MSX1P28360 GOSR2-234ENST00000640138 3408 ntTSL 5 BASIC8.12□□□□□ -1.11
MSX1P28360 UBE2N-205ENST00000550657 3018 ntTSL 2 BASIC8.12□□□□□ -1.11
MSX1P28360 NLRP9P1-201ENST00000540920 2655 ntBASIC8.12□□□□□ -1.11
MSX1P28360 EIF3EP1-201ENST00000433978 1316 ntBASIC8.12□□□□□ -1.11
MSX1P28360 ZNF763-201ENST00000343949 2621 ntAPPRIS P2 TSL 2 BASIC8.12□□□□□ -1.11
MSX1P28360 SCN11A-201ENST00000302328 6500 ntAPPRIS P2 TSL 5 BASIC8.12□□□□□ -1.11
MSX1P28360 ZNF888-202ENST00000638862 4195 ntAPPRIS P1 TSL 5 BASIC8.12□□□□□ -1.11
MSX1P28360 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC8.12□□□□□ -1.11
MSX1P28360 TREM1-202ENST00000334475 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC8.12□□□□□ -1.11
MSX1P28360 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
MSX1P28360 Y_RNA.70-201ENST00000362886 110 ntBASIC8.12□□□□□ -1.11
MSX1P28360 U3.4-201ENST00000363352 213 ntBASIC8.12□□□□□ -1.11
MSX1P28360 RNA5-8SP2-201ENST00000363564 152 ntBASIC8.12□□□□□ -1.11
MSX1P28360 AC121338.1-201ENST00000380601 1287 ntTSL 2 BASIC8.12□□□□□ -1.11
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms