Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 TRIM6-TRIM34-201ENST00000354852 3391 ntAPPRIS P1 TSL 2 BASIC6.53□□□□□ -1.36
NKX3-1Q99801 AC107980.1-201ENST00000558671 3355 ntBASIC6.53□□□□□ -1.36
NKX3-1Q99801 ASIC5-201ENST00000537611 1692 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
NKX3-1Q99801 STS-201ENST00000217961 6521 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
NKX3-1Q99801 TCL6-203ENST00000459662 3307 ntTSL 2 BASIC6.53□□□□□ -1.36
NKX3-1Q99801 AC097478.1-207ENST00000612706 2422 ntTSL 5 BASIC6.53□□□□□ -1.36
NKX3-1Q99801 PRKAA1-201ENST00000296800 1134 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
NKX3-1Q99801 PTTG1-201ENST00000352433 753 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
NKX3-1Q99801 CBWD5-205ENST00000377395 1143 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
NKX3-1Q99801 MIR555-201ENST00000384987 96 ntBASIC6.53□□□□□ -1.36
NKX3-1Q99801 AL390039.1-201ENST00000399148 611 ntBASIC6.53□□□□□ -1.36
NKX3-1Q99801 GRIK1-AS1-202ENST00000412579 818 ntTSL 5 BASIC6.53□□□□□ -1.36
NKX3-1Q99801 RBM22P7-201ENST00000421321 280 ntBASIC6.53□□□□□ -1.36
NKX3-1Q99801 AL365295.1-204ENST00000425648 553 ntTSL 4 BASIC6.53□□□□□ -1.36
NKX3-1Q99801 LINC00665-202ENST00000427868 690 ntTSL 3 BASIC6.53□□□□□ -1.36
NKX3-1Q99801 AL137220.1-201ENST00000431369 661 ntTSL 2 BASIC6.53□□□□□ -1.36
NKX3-1Q99801 AC019055.1-201ENST00000432822 443 ntTSL 3 BASIC6.53□□□□□ -1.36
NKX3-1Q99801 AL512882.1-201ENST00000436086 832 ntBASIC6.53□□□□□ -1.36
NKX3-1Q99801 AL512649.2-201ENST00000446206 597 ntTSL 3 BASIC6.53□□□□□ -1.36
NKX3-1Q99801 AC133965.1-201ENST00000452984 354 ntBASIC6.53□□□□□ -1.36
NKX3-1Q99801 AC011005.4-201ENST00000466717 535 ntTSL 3 BASIC6.53□□□□□ -1.36
NKX3-1Q99801 AC023794.3-204ENST00000510754 236 ntBASIC6.53□□□□□ -1.36
NKX3-1Q99801 PSD2-AS1-201ENST00000515306 412 ntTSL 3 BASIC6.53□□□□□ -1.36
NKX3-1Q99801 NR1I3-233ENST00000515452 1093 ntTSL 2 BASIC6.53□□□□□ -1.36
NKX3-1Q99801 POLB-211ENST00000521492 786 ntTSL 2 BASIC6.53□□□□□ -1.36
NKX3-1Q99801 AC022639.1-201ENST00000523191 573 ntTSL 4 BASIC6.53□□□□□ -1.36
NKX3-1Q99801 LINC01608-202ENST00000524283 561 ntTSL 4 BASIC6.53□□□□□ -1.36
NKX3-1Q99801 AP005597.1-201ENST00000534192 802 ntBASIC6.53□□□□□ -1.36
NKX3-1Q99801 AC006205.1-201ENST00000538067 389 ntTSL 2 BASIC6.53□□□□□ -1.36
NKX3-1Q99801 AC026111.1-201ENST00000551090 1195 ntBASIC6.53□□□□□ -1.36
NKX3-1Q99801 AC092868.1-201ENST00000557949 802 ntBASIC6.53□□□□□ -1.36
NKX3-1Q99801 AC138811.1-201ENST00000569096 361 ntTSL 3 BASIC6.53□□□□□ -1.36
NKX3-1Q99801 LINC01572-204ENST00000570035 831 ntTSL 3 BASIC6.53□□□□□ -1.36
NKX3-1Q99801 OR7A18P-201ENST00000600416 277 ntBASIC6.53□□□□□ -1.36
NKX3-1Q99801 ZNF473-209ENST00000601364 603 ntTSL 3 BASIC6.53□□□□□ -1.36
NKX3-1Q99801 AL096855.2-201ENST00000605785 369 ntBASIC6.53□□□□□ -1.36
NKX3-1Q99801 AC138904.2-201ENST00000614412 107 ntBASIC6.53□□□□□ -1.36
NKX3-1Q99801 KRTAP4-1-202ENST00000620667 737 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
NKX3-1Q99801 CCDC125-201ENST00000383374 2006 ntTSL 5 BASIC6.53□□□□□ -1.36
NKX3-1Q99801 NPHP1-203ENST00000393272 2752 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
NKX3-1Q99801 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
NKX3-1Q99801 CAGE1-203ENST00000379918 2877 ntAPPRIS ALT2 TSL 5 BASIC6.53□□□□□ -1.36
NKX3-1Q99801 AP000705.2-201ENST00000433524 1386 ntBASIC6.53□□□□□ -1.36
NKX3-1Q99801 IL15-207ENST00000514653 1388 ntTSL 5 BASIC6.53□□□□□ -1.36
NKX3-1Q99801 AC106882.1-201ENST00000515789 2371 ntTSL 2 BASIC6.53□□□□□ -1.36
NKX3-1Q99801 ATP1B4-203ENST00000539306 4644 ntTSL 2 BASIC6.53□□□□□ -1.36
NKX3-1Q99801 CTNND1-218ENST00000528232 5745 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
NKX3-1Q99801 LINC01103-201ENST00000430551 1457 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
NKX3-1Q99801 TCEANC2-201ENST00000234827 10436 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
NKX3-1Q99801 ZNF540-206ENST00000589117 2349 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
NKX3-1Q99801 DAZ3-202ENST00000382365 3503 ntAPPRIS P5 TSL 1 (best) BASIC6.53□□□□□ -1.36
NKX3-1Q99801 DNM1L-203ENST00000381000 4397 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
NKX3-1Q99801 PSMC1P7-201ENST00000495689 1315 ntBASIC6.52□□□□□ -1.37
NKX3-1Q99801 CFAP61-210ENST00000451767 1946 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
NKX3-1Q99801 MSH6-209ENST00000538136 4055 ntTSL 2 BASIC6.52□□□□□ -1.37
NKX3-1Q99801 USPL1-203ENST00000614860 4074 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
NKX3-1Q99801 BDNF-212ENST00000525528 4766 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
NKX3-1Q99801 GRIK2-206ENST00000413795 4876 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
NKX3-1Q99801 IRAK4-202ENST00000440781 1409 ntTSL 2 BASIC6.52□□□□□ -1.37
NKX3-1Q99801 SLC25A40-201ENST00000341119 4045 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
NKX3-1Q99801 FRMD7-203ENST00000464296 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
NKX3-1Q99801 ZMYM2-202ENST00000382871 5051 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
NKX3-1Q99801 FRMD4B-210ENST00000478263 3761 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
NKX3-1Q99801 BCO2-203ENST00000438022 2598 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
NKX3-1Q99801 ANKRD36BP2-207ENST00000622311 5398 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
NKX3-1Q99801 PCDH15-213ENST00000395445 5917 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
NKX3-1Q99801 JAKMIP2-205ENST00000507386 5915 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
NKX3-1Q99801 DNAJC5G-203ENST00000404433 1647 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
NKX3-1Q99801 CNTN4-AS1-201ENST00000442749 1640 ntTSL 3 BASIC6.52□□□□□ -1.37
NKX3-1Q99801 CNPY1-204ENST00000636446 1637 ntAPPRIS P5 TSL 5 BASIC6.52□□□□□ -1.37
NKX3-1Q99801 FCHSD2-203ENST00000409314 4509 ntTSL 5 BASIC6.52□□□□□ -1.37
NKX3-1Q99801 TAAR8-201ENST00000275200 1029 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
NKX3-1Q99801 OR1J4-201ENST00000340750 942 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
NKX3-1Q99801 TRBV5-3-201ENST00000390362 343 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
NKX3-1Q99801 RPL5P35-201ENST00000398869 816 ntBASIC6.52□□□□□ -1.37
NKX3-1Q99801 PSG11-203ENST00000403486 1163 ntTSL 2 BASIC6.52□□□□□ -1.37
NKX3-1Q99801 AL353611.1-201ENST00000417054 462 ntTSL 5 BASIC6.52□□□□□ -1.37
NKX3-1Q99801 AC012513.1-201ENST00000417481 784 ntTSL 2 BASIC6.52□□□□□ -1.37
NKX3-1Q99801 FNDC3B-205ENST00000423424 408 ntTSL 3 BASIC6.52□□□□□ -1.37
NKX3-1Q99801 RPL23AP34-201ENST00000423483 410 ntBASIC6.52□□□□□ -1.37
NKX3-1Q99801 TPRG1-AS2-201ENST00000425454 479 ntTSL 5 BASIC6.52□□□□□ -1.37
NKX3-1Q99801 GAPDHP51-201ENST00000426454 1000 ntBASIC6.52□□□□□ -1.37
NKX3-1Q99801 EEF1A1P27-201ENST00000429983 1135 ntBASIC6.52□□□□□ -1.37
NKX3-1Q99801 KRTAP3-4P-201ENST00000430780 280 ntBASIC6.52□□□□□ -1.37
NKX3-1Q99801 AJ006995.1-201ENST00000433344 572 ntTSL 3 BASIC6.52□□□□□ -1.37
NKX3-1Q99801 TAAR9-201ENST00000434551 1047 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
NKX3-1Q99801 HMGB2-202ENST00000438704 1032 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
NKX3-1Q99801 RPSAP41-201ENST00000439695 860 ntBASIC6.52□□□□□ -1.37
NKX3-1Q99801 LINC01284-201ENST00000442994 730 ntTSL 5 BASIC6.52□□□□□ -1.37
NKX3-1Q99801 ALG13-214ENST00000482742 620 ntTSL 2 BASIC6.52□□□□□ -1.37
NKX3-1Q99801 ZNF721-203ENST00000506646 935 ntTSL 2 BASIC6.52□□□□□ -1.37
NKX3-1Q99801 AC104211.2-201ENST00000521317 436 ntTSL 5 BASIC6.52□□□□□ -1.37
NKX3-1Q99801 DACT3-AS1-202ENST00000525008 496 ntTSL 2 BASIC6.52□□□□□ -1.37
NKX3-1Q99801 HHLA3-207ENST00000531950 541 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.37
NKX3-1Q99801 NOVA1-209ENST00000547619 947 ntTSL 3 BASIC6.52□□□□□ -1.37
NKX3-1Q99801 DAZAP2-210ENST00000551313 587 ntTSL 3 BASIC6.52□□□□□ -1.37
NKX3-1Q99801 TMEM106C-219ENST00000552546 742 ntTSL 4 BASIC6.52□□□□□ -1.37
NKX3-1Q99801 OR4N1P-201ENST00000554847 949 ntBASIC6.52□□□□□ -1.37
NKX3-1Q99801 CYB5B-205ENST00000561792 823 ntTSL 5 BASIC6.52□□□□□ -1.37
NKX3-1Q99801 TUBAP4-201ENST00000569261 416 ntBASIC6.52□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 93.9 ms