Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PCDHA3Q9Y5H8 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PCDHA3Q9Y5H8 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
PCDHA3Q9Y5H8 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PCDHA3Q9Y5H8 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
PCDHA3Q9Y5H8 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
PCDHA3Q9Y5H8 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PCDHA3Q9Y5H8 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PCDHA3Q9Y5H8 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PCDHA3Q9Y5H8 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PCDHA3Q9Y5H8 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
PCDHA3Q9Y5H8 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC20.96■□□□□ 0.95
PCDHA3Q9Y5H8 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC20.96■□□□□ 0.95
PCDHA3Q9Y5H8 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC20.96■□□□□ 0.95
PCDHA3Q9Y5H8 PLD4-205ENST00000553861 667 ntTSL 2 BASIC20.96■□□□□ 0.95
PCDHA3Q9Y5H8 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC20.96■□□□□ 0.95
PCDHA3Q9Y5H8 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC20.96■□□□□ 0.95
PCDHA3Q9Y5H8 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PCDHA3Q9Y5H8 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PCDHA3Q9Y5H8 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCDHA3Q9Y5H8 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCDHA3Q9Y5H8 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCDHA3Q9Y5H8 TREX1-205ENST00000625293 1783 ntBASIC20.95■□□□□ 0.94
PCDHA3Q9Y5H8 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCDHA3Q9Y5H8 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
PCDHA3Q9Y5H8 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.95■□□□□ 0.94
PCDHA3Q9Y5H8 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCDHA3Q9Y5H8 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC20.95■□□□□ 0.94
PCDHA3Q9Y5H8 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCDHA3Q9Y5H8 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC20.95■□□□□ 0.94
PCDHA3Q9Y5H8 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC20.95■□□□□ 0.94
PCDHA3Q9Y5H8 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC20.95■□□□□ 0.94
PCDHA3Q9Y5H8 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
PCDHA3Q9Y5H8 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC20.95■□□□□ 0.94
PCDHA3Q9Y5H8 AC100791.3-201ENST00000617619 330 ntBASIC20.95■□□□□ 0.94
PCDHA3Q9Y5H8 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCDHA3Q9Y5H8 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCDHA3Q9Y5H8 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC20.95■□□□□ 0.94
PCDHA3Q9Y5H8 POLI-202ENST00000406285 2030 ntTSL 2 BASIC20.95■□□□□ 0.94
PCDHA3Q9Y5H8 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCDHA3Q9Y5H8 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCDHA3Q9Y5H8 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
PCDHA3Q9Y5H8 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.95■□□□□ 0.94
PCDHA3Q9Y5H8 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCDHA3Q9Y5H8 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCDHA3Q9Y5H8 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCDHA3Q9Y5H8 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.94■□□□□ 0.94
PCDHA3Q9Y5H8 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCDHA3Q9Y5H8 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCDHA3Q9Y5H8 RARRES2P4-201ENST00000514074 484 ntBASIC20.94■□□□□ 0.94
PCDHA3Q9Y5H8 MFSD11-216ENST00000590393 1141 ntBASIC20.94■□□□□ 0.94
PCDHA3Q9Y5H8 AC087623.3-201ENST00000607047 1098 ntBASIC20.94■□□□□ 0.94
PCDHA3Q9Y5H8 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCDHA3Q9Y5H8 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
PCDHA3Q9Y5H8 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PCDHA3Q9Y5H8 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC20.94■□□□□ 0.94
PCDHA3Q9Y5H8 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PCDHA3Q9Y5H8 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC20.94■□□□□ 0.94
PCDHA3Q9Y5H8 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
PCDHA3Q9Y5H8 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PCDHA3Q9Y5H8 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.94■□□□□ 0.94
PCDHA3Q9Y5H8 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.94■□□□□ 0.94
PCDHA3Q9Y5H8 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCDHA3Q9Y5H8 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PCDHA3Q9Y5H8 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
PCDHA3Q9Y5H8 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC20.93■□□□□ 0.94
PCDHA3Q9Y5H8 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC20.93■□□□□ 0.94
PCDHA3Q9Y5H8 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCDHA3Q9Y5H8 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCDHA3Q9Y5H8 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCDHA3Q9Y5H8 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCDHA3Q9Y5H8 MCRIP2P1-201ENST00000394346 511 ntBASIC20.93■□□□□ 0.94
PCDHA3Q9Y5H8 HSCB-202ENST00000398941 955 ntTSL 2 BASIC20.93■□□□□ 0.94
PCDHA3Q9Y5H8 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC20.93■□□□□ 0.94
PCDHA3Q9Y5H8 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC20.93■□□□□ 0.94
PCDHA3Q9Y5H8 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PCDHA3Q9Y5H8 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC20.93■□□□□ 0.94
PCDHA3Q9Y5H8 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
PCDHA3Q9Y5H8 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PCDHA3Q9Y5H8 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCDHA3Q9Y5H8 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCDHA3Q9Y5H8 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCDHA3Q9Y5H8 GAS2L1P2-201ENST00000436355 1356 ntBASIC20.93■□□□□ 0.94
PCDHA3Q9Y5H8 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
PCDHA3Q9Y5H8 KRT8P17-201ENST00000453110 1448 ntBASIC20.93■□□□□ 0.94
PCDHA3Q9Y5H8 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCDHA3Q9Y5H8 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC20.93■□□□□ 0.94
PCDHA3Q9Y5H8 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC20.93■□□□□ 0.94
PCDHA3Q9Y5H8 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCDHA3Q9Y5H8 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCDHA3Q9Y5H8 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC20.93■□□□□ 0.94
PCDHA3Q9Y5H8 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
PCDHA3Q9Y5H8 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
PCDHA3Q9Y5H8 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
PCDHA3Q9Y5H8 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
PCDHA3Q9Y5H8 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PCDHA3Q9Y5H8 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PCDHA3Q9Y5H8 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC20.92■□□□□ 0.94
PCDHA3Q9Y5H8 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PCDHA3Q9Y5H8 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms