Protein–RNA interactions for Protein: Q9Y587

AP4S1, AP-4 complex subunit sigma-1, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4S1Q9Y587 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
AP4S1Q9Y587 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
AP4S1Q9Y587 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.62
AP4S1Q9Y587 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
AP4S1Q9Y587 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
AP4S1Q9Y587 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
AP4S1Q9Y587 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
AP4S1Q9Y587 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC18.95■□□□□ 0.62
AP4S1Q9Y587 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.94■□□□□ 0.62
AP4S1Q9Y587 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
AP4S1Q9Y587 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC18.94■□□□□ 0.62
AP4S1Q9Y587 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
AP4S1Q9Y587 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC18.94■□□□□ 0.62
AP4S1Q9Y587 BX119927.1-201ENST00000636596 1552 ntBASIC18.94■□□□□ 0.62
AP4S1Q9Y587 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
AP4S1Q9Y587 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
AP4S1Q9Y587 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
AP4S1Q9Y587 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC18.94■□□□□ 0.62
AP4S1Q9Y587 EEF1DP3-203ENST00000566025 782 ntBASIC18.94■□□□□ 0.62
AP4S1Q9Y587 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC18.94■□□□□ 0.62
AP4S1Q9Y587 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
AP4S1Q9Y587 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
AP4S1Q9Y587 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
AP4S1Q9Y587 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.93■□□□□ 0.62
AP4S1Q9Y587 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC18.93■□□□□ 0.62
AP4S1Q9Y587 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
AP4S1Q9Y587 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
AP4S1Q9Y587 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.93■□□□□ 0.62
AP4S1Q9Y587 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
AP4S1Q9Y587 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
AP4S1Q9Y587 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
AP4S1Q9Y587 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC18.93■□□□□ 0.62
AP4S1Q9Y587 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.93■□□□□ 0.62
AP4S1Q9Y587 DPP3P2-201ENST00000416030 1696 ntBASIC18.93■□□□□ 0.62
AP4S1Q9Y587 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
AP4S1Q9Y587 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
AP4S1Q9Y587 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
AP4S1Q9Y587 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
AP4S1Q9Y587 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.93■□□□□ 0.62
AP4S1Q9Y587 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.93■□□□□ 0.62
AP4S1Q9Y587 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
AP4S1Q9Y587 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
AP4S1Q9Y587 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
AP4S1Q9Y587 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
AP4S1Q9Y587 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC18.92■□□□□ 0.62
AP4S1Q9Y587 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC18.92■□□□□ 0.62
AP4S1Q9Y587 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
AP4S1Q9Y587 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
AP4S1Q9Y587 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.92■□□□□ 0.62
AP4S1Q9Y587 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.92■□□□□ 0.62
AP4S1Q9Y587 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
AP4S1Q9Y587 AC005082.1-201ENST00000413042 2259 ntBASIC18.92■□□□□ 0.62
AP4S1Q9Y587 QDPR-206ENST00000508623 601 ntTSL 3 BASIC18.92■□□□□ 0.62
AP4S1Q9Y587 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC18.92■□□□□ 0.62
AP4S1Q9Y587 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC18.92■□□□□ 0.62
AP4S1Q9Y587 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
AP4S1Q9Y587 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC18.92■□□□□ 0.62
AP4S1Q9Y587 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
AP4S1Q9Y587 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
AP4S1Q9Y587 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC18.92■□□□□ 0.62
AP4S1Q9Y587 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
AP4S1Q9Y587 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
AP4S1Q9Y587 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.91■□□□□ 0.62
AP4S1Q9Y587 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
AP4S1Q9Y587 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.91■□□□□ 0.62
AP4S1Q9Y587 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
AP4S1Q9Y587 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
AP4S1Q9Y587 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
AP4S1Q9Y587 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
AP4S1Q9Y587 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
AP4S1Q9Y587 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.91■□□□□ 0.62
AP4S1Q9Y587 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
AP4S1Q9Y587 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.91■□□□□ 0.62
AP4S1Q9Y587 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
AP4S1Q9Y587 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
AP4S1Q9Y587 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
AP4S1Q9Y587 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
AP4S1Q9Y587 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
AP4S1Q9Y587 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
AP4S1Q9Y587 AL512631.2-201ENST00000604634 923 ntBASIC18.91■□□□□ 0.62
AP4S1Q9Y587 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC18.91■□□□□ 0.62
AP4S1Q9Y587 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC18.91■□□□□ 0.62
AP4S1Q9Y587 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
AP4S1Q9Y587 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
AP4S1Q9Y587 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
AP4S1Q9Y587 STK25-204ENST00000405585 1643 ntTSL 2 BASIC18.91■□□□□ 0.62
AP4S1Q9Y587 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
AP4S1Q9Y587 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
AP4S1Q9Y587 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
AP4S1Q9Y587 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
AP4S1Q9Y587 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.91■□□□□ 0.62
AP4S1Q9Y587 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.91■□□□□ 0.62
AP4S1Q9Y587 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
AP4S1Q9Y587 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
AP4S1Q9Y587 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC18.9■□□□□ 0.62
AP4S1Q9Y587 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
AP4S1Q9Y587 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
AP4S1Q9Y587 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
AP4S1Q9Y587 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
AP4S1Q9Y587 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms