Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HIF3AQ9Y2N7 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC18.12■□□□□ 0.49
HIF3AQ9Y2N7 GAS2L1P2-201ENST00000436355 1356 ntBASIC18.12■□□□□ 0.49
HIF3AQ9Y2N7 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC18.12■□□□□ 0.49
HIF3AQ9Y2N7 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
HIF3AQ9Y2N7 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HIF3AQ9Y2N7 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
HIF3AQ9Y2N7 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
HIF3AQ9Y2N7 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HIF3AQ9Y2N7 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HIF3AQ9Y2N7 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
HIF3AQ9Y2N7 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC18.11■□□□□ 0.49
HIF3AQ9Y2N7 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HIF3AQ9Y2N7 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
HIF3AQ9Y2N7 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HIF3AQ9Y2N7 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC18.11■□□□□ 0.49
HIF3AQ9Y2N7 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HIF3AQ9Y2N7 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC18.11■□□□□ 0.49
HIF3AQ9Y2N7 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
HIF3AQ9Y2N7 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
HIF3AQ9Y2N7 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC18.11■□□□□ 0.49
HIF3AQ9Y2N7 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC18.11■□□□□ 0.49
HIF3AQ9Y2N7 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC18.11■□□□□ 0.49
HIF3AQ9Y2N7 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC18.11■□□□□ 0.49
HIF3AQ9Y2N7 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
HIF3AQ9Y2N7 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC18.11■□□□□ 0.49
HIF3AQ9Y2N7 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
HIF3AQ9Y2N7 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
HIF3AQ9Y2N7 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HIF3AQ9Y2N7 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HIF3AQ9Y2N7 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HIF3AQ9Y2N7 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
HIF3AQ9Y2N7 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HIF3AQ9Y2N7 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.1■□□□□ 0.49
HIF3AQ9Y2N7 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
HIF3AQ9Y2N7 CD37-204ENST00000535669 1674 ntTSL 2 BASIC18.1■□□□□ 0.49
HIF3AQ9Y2N7 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HIF3AQ9Y2N7 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC18.1■□□□□ 0.49
HIF3AQ9Y2N7 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
HIF3AQ9Y2N7 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
HIF3AQ9Y2N7 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC18.1■□□□□ 0.49
HIF3AQ9Y2N7 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
HIF3AQ9Y2N7 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC18.1■□□□□ 0.49
HIF3AQ9Y2N7 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC18.1■□□□□ 0.49
HIF3AQ9Y2N7 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC18.1■□□□□ 0.49
HIF3AQ9Y2N7 BID-214ENST00000617586 542 ntTSL 5 BASIC18.1■□□□□ 0.49
HIF3AQ9Y2N7 ANKRD20A6P-201ENST00000618763 204 ntBASIC18.1■□□□□ 0.49
HIF3AQ9Y2N7 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HIF3AQ9Y2N7 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HIF3AQ9Y2N7 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
HIF3AQ9Y2N7 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC18.1■□□□□ 0.49
HIF3AQ9Y2N7 AL691432.2-201ENST00000607222 2038 ntBASIC18.1■□□□□ 0.49
HIF3AQ9Y2N7 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.1■□□□□ 0.49
HIF3AQ9Y2N7 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.1■□□□□ 0.49
HIF3AQ9Y2N7 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HIF3AQ9Y2N7 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
HIF3AQ9Y2N7 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
HIF3AQ9Y2N7 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
HIF3AQ9Y2N7 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC18.09■□□□□ 0.49
HIF3AQ9Y2N7 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HIF3AQ9Y2N7 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.09■□□□□ 0.49
HIF3AQ9Y2N7 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HIF3AQ9Y2N7 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC18.09■□□□□ 0.49
HIF3AQ9Y2N7 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
HIF3AQ9Y2N7 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HIF3AQ9Y2N7 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HIF3AQ9Y2N7 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
HIF3AQ9Y2N7 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC18.09■□□□□ 0.49
HIF3AQ9Y2N7 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HIF3AQ9Y2N7 AL162430.1-201ENST00000480705 870 ntBASIC18.09■□□□□ 0.49
HIF3AQ9Y2N7 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC18.09■□□□□ 0.49
HIF3AQ9Y2N7 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC18.09■□□□□ 0.49
HIF3AQ9Y2N7 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC18.09■□□□□ 0.49
HIF3AQ9Y2N7 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
HIF3AQ9Y2N7 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HIF3AQ9Y2N7 MIR5787-201ENST00000611784 55 ntBASIC18.09■□□□□ 0.49
HIF3AQ9Y2N7 AC231657.2-201ENST00000624556 255 ntBASIC18.09■□□□□ 0.49
HIF3AQ9Y2N7 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC18.09■□□□□ 0.49
HIF3AQ9Y2N7 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC18.09■□□□□ 0.49
HIF3AQ9Y2N7 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC18.09■□□□□ 0.49
HIF3AQ9Y2N7 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HIF3AQ9Y2N7 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HIF3AQ9Y2N7 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HIF3AQ9Y2N7 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC18.09■□□□□ 0.49
HIF3AQ9Y2N7 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
HIF3AQ9Y2N7 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC18.09■□□□□ 0.49
HIF3AQ9Y2N7 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HIF3AQ9Y2N7 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
HIF3AQ9Y2N7 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
HIF3AQ9Y2N7 LBX2-AS1-202ENST00000603175 2083 ntBASIC18.08■□□□□ 0.49
HIF3AQ9Y2N7 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC18.08■□□□□ 0.49
HIF3AQ9Y2N7 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
HIF3AQ9Y2N7 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC18.08■□□□□ 0.48
HIF3AQ9Y2N7 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
HIF3AQ9Y2N7 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HIF3AQ9Y2N7 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HIF3AQ9Y2N7 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC18.08■□□□□ 0.48
HIF3AQ9Y2N7 BET1L-204ENST00000410108 637 ntTSL 3 BASIC18.08■□□□□ 0.48
HIF3AQ9Y2N7 CYP2T1P-201ENST00000432607 1285 ntBASIC18.08■□□□□ 0.48
HIF3AQ9Y2N7 AC105020.6-201ENST00000621523 1217 ntBASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms