Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA2Q9Y261 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
FOXA2Q9Y261 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
FOXA2Q9Y261 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA2Q9Y261 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
FOXA2Q9Y261 BET1L-204ENST00000410108 637 ntTSL 3 BASIC16.22■□□□□ 0.19
FOXA2Q9Y261 UQCRFS1P1-201ENST00000435169 820 ntBASIC16.22■□□□□ 0.19
FOXA2Q9Y261 AC026185.1-201ENST00000445748 174 ntBASIC16.22■□□□□ 0.19
FOXA2Q9Y261 PBX1-209ENST00000485769 834 ntTSL 2 BASIC16.22■□□□□ 0.19
FOXA2Q9Y261 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
FOXA2Q9Y261 AL162412.1-201ENST00000567129 965 ntBASIC16.22■□□□□ 0.19
FOXA2Q9Y261 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC16.22■□□□□ 0.19
FOXA2Q9Y261 PARP1-210ENST00000629232 477 ntTSL 5 BASIC16.22■□□□□ 0.19
FOXA2Q9Y261 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA2Q9Y261 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA2Q9Y261 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA2Q9Y261 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC16.22■□□□□ 0.19
FOXA2Q9Y261 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA2Q9Y261 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
FOXA2Q9Y261 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
FOXA2Q9Y261 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA2Q9Y261 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA2Q9Y261 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA2Q9Y261 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA2Q9Y261 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA2Q9Y261 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC16.21■□□□□ 0.19
FOXA2Q9Y261 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA2Q9Y261 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA2Q9Y261 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA2Q9Y261 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC16.21■□□□□ 0.19
FOXA2Q9Y261 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC16.21■□□□□ 0.19
FOXA2Q9Y261 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC16.21■□□□□ 0.19
FOXA2Q9Y261 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA2Q9Y261 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA2Q9Y261 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA2Q9Y261 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC16.21■□□□□ 0.19
FOXA2Q9Y261 CDCA4P2-201ENST00000441182 718 ntBASIC16.21■□□□□ 0.19
FOXA2Q9Y261 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC16.21■□□□□ 0.19
FOXA2Q9Y261 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC16.21■□□□□ 0.19
FOXA2Q9Y261 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC16.21■□□□□ 0.19
FOXA2Q9Y261 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
FOXA2Q9Y261 MAZ-216ENST00000616501 991 ntTSL 5 BASIC16.21■□□□□ 0.19
FOXA2Q9Y261 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC16.21■□□□□ 0.19
FOXA2Q9Y261 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC16.21■□□□□ 0.19
FOXA2Q9Y261 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC16.21■□□□□ 0.19
FOXA2Q9Y261 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA2Q9Y261 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA2Q9Y261 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA2Q9Y261 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC16.21■□□□□ 0.19
FOXA2Q9Y261 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA2Q9Y261 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA2Q9Y261 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
FOXA2Q9Y261 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC16.21■□□□□ 0.18
FOXA2Q9Y261 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
FOXA2Q9Y261 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
FOXA2Q9Y261 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA2Q9Y261 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC16.2■□□□□ 0.18
FOXA2Q9Y261 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA2Q9Y261 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC16.2■□□□□ 0.18
FOXA2Q9Y261 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA2Q9Y261 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA2Q9Y261 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA2Q9Y261 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC16.2■□□□□ 0.18
FOXA2Q9Y261 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA2Q9Y261 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA2Q9Y261 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA2Q9Y261 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC16.2■□□□□ 0.18
FOXA2Q9Y261 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
FOXA2Q9Y261 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC16.2■□□□□ 0.18
FOXA2Q9Y261 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
FOXA2Q9Y261 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA2Q9Y261 AC005181.1-201ENST00000604782 1256 ntBASIC16.2■□□□□ 0.18
FOXA2Q9Y261 AC008694.1-202ENST00000636953 945 ntBASIC16.2■□□□□ 0.18
FOXA2Q9Y261 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA2Q9Y261 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA2Q9Y261 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA2Q9Y261 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC16.2■□□□□ 0.18
FOXA2Q9Y261 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
FOXA2Q9Y261 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC16.2■□□□□ 0.18
FOXA2Q9Y261 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA2Q9Y261 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA2Q9Y261 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA2Q9Y261 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
FOXA2Q9Y261 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC16.19■□□□□ 0.18
FOXA2Q9Y261 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC16.19■□□□□ 0.18
FOXA2Q9Y261 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC16.19■□□□□ 0.18
FOXA2Q9Y261 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
FOXA2Q9Y261 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
FOXA2Q9Y261 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA2Q9Y261 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA2Q9Y261 LBX2-AS1-202ENST00000603175 2083 ntBASIC16.19■□□□□ 0.18
FOXA2Q9Y261 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA2Q9Y261 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC16.19■□□□□ 0.18
FOXA2Q9Y261 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA2Q9Y261 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC16.19■□□□□ 0.18
FOXA2Q9Y261 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA2Q9Y261 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA2Q9Y261 PGM5P4-201ENST00000421970 445 ntBASIC16.19■□□□□ 0.18
FOXA2Q9Y261 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA2Q9Y261 AC069236.1-201ENST00000604339 616 ntBASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms