Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
NOTCH3Q9UM47 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC15.47■□□□□ 0.07
NOTCH3Q9UM47 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
NOTCH3Q9UM47 AC127496.7-201ENST00000625110 1798 ntBASIC15.47■□□□□ 0.07
NOTCH3Q9UM47 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC15.47■□□□□ 0.07
NOTCH3Q9UM47 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
NOTCH3Q9UM47 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC15.47■□□□□ 0.07
NOTCH3Q9UM47 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC15.47■□□□□ 0.07
NOTCH3Q9UM47 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
NOTCH3Q9UM47 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC15.47■□□□□ 0.07
NOTCH3Q9UM47 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC15.47■□□□□ 0.07
NOTCH3Q9UM47 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
NOTCH3Q9UM47 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC15.47■□□□□ 0.07
NOTCH3Q9UM47 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
NOTCH3Q9UM47 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
NOTCH3Q9UM47 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
NOTCH3Q9UM47 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
NOTCH3Q9UM47 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC15.47■□□□□ 0.07
NOTCH3Q9UM47 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
NOTCH3Q9UM47 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC15.46■□□□□ 0.07
NOTCH3Q9UM47 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC15.46■□□□□ 0.07
NOTCH3Q9UM47 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
NOTCH3Q9UM47 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
NOTCH3Q9UM47 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC15.46■□□□□ 0.07
NOTCH3Q9UM47 GUSBP5-202ENST00000510805 1989 ntBASIC15.46■□□□□ 0.07
NOTCH3Q9UM47 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
NOTCH3Q9UM47 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
NOTCH3Q9UM47 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
NOTCH3Q9UM47 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
NOTCH3Q9UM47 AL117328.2-201ENST00000624617 1940 ntBASIC15.46■□□□□ 0.07
NOTCH3Q9UM47 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC15.46■□□□□ 0.07
NOTCH3Q9UM47 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
NOTCH3Q9UM47 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
NOTCH3Q9UM47 AC116050.2-201ENST00000612102 1779 ntBASIC15.46■□□□□ 0.07
NOTCH3Q9UM47 FBXW4P1-201ENST00000426721 2239 ntBASIC15.46■□□□□ 0.07
NOTCH3Q9UM47 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC15.46■□□□□ 0.07
NOTCH3Q9UM47 LINC00565-201ENST00000562710 2331 ntBASIC15.46■□□□□ 0.07
NOTCH3Q9UM47 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC15.46■□□□□ 0.07
NOTCH3Q9UM47 MOK-233ENST00000524214 1539 ntTSL 2 BASIC15.46■□□□□ 0.07
NOTCH3Q9UM47 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC15.46■□□□□ 0.07
NOTCH3Q9UM47 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
NOTCH3Q9UM47 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
NOTCH3Q9UM47 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
NOTCH3Q9UM47 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC15.46■□□□□ 0.07
NOTCH3Q9UM47 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.07
NOTCH3Q9UM47 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC15.46■□□□□ 0.07
NOTCH3Q9UM47 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC15.46■□□□□ 0.07
NOTCH3Q9UM47 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC15.46■□□□□ 0.07
NOTCH3Q9UM47 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
NOTCH3Q9UM47 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
NOTCH3Q9UM47 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
NOTCH3Q9UM47 AC012676.1-201ENST00000574705 1949 ntBASIC15.46■□□□□ 0.07
NOTCH3Q9UM47 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
NOTCH3Q9UM47 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
NOTCH3Q9UM47 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
NOTCH3Q9UM47 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
NOTCH3Q9UM47 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC15.46■□□□□ 0.06
NOTCH3Q9UM47 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.06
NOTCH3Q9UM47 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.06
NOTCH3Q9UM47 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
NOTCH3Q9UM47 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.06
NOTCH3Q9UM47 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
NOTCH3Q9UM47 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.06
NOTCH3Q9UM47 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
NOTCH3Q9UM47 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
NOTCH3Q9UM47 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
NOTCH3Q9UM47 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
NOTCH3Q9UM47 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
NOTCH3Q9UM47 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
NOTCH3Q9UM47 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
NOTCH3Q9UM47 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
NOTCH3Q9UM47 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
NOTCH3Q9UM47 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
NOTCH3Q9UM47 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
NOTCH3Q9UM47 AC124283.5-201ENST00000624661 1809 ntBASIC15.45■□□□□ 0.06
NOTCH3Q9UM47 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
NOTCH3Q9UM47 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
NOTCH3Q9UM47 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC15.45■□□□□ 0.06
NOTCH3Q9UM47 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
NOTCH3Q9UM47 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
NOTCH3Q9UM47 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
NOTCH3Q9UM47 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC15.45■□□□□ 0.06
NOTCH3Q9UM47 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
NOTCH3Q9UM47 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
NOTCH3Q9UM47 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
NOTCH3Q9UM47 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
NOTCH3Q9UM47 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
NOTCH3Q9UM47 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC15.45■□□□□ 0.06
NOTCH3Q9UM47 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
NOTCH3Q9UM47 DYM-203ENST00000442713 2147 ntTSL 2 BASIC15.45■□□□□ 0.06
NOTCH3Q9UM47 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC15.45■□□□□ 0.06
NOTCH3Q9UM47 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
NOTCH3Q9UM47 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
NOTCH3Q9UM47 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
NOTCH3Q9UM47 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
NOTCH3Q9UM47 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC15.44■□□□□ 0.06
NOTCH3Q9UM47 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC15.44■□□□□ 0.06
NOTCH3Q9UM47 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
NOTCH3Q9UM47 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC15.44■□□□□ 0.06
NOTCH3Q9UM47 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms