Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIMD1Q9UGP4 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LIMD1Q9UGP4 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC20.97■□□□□ 0.95
LIMD1Q9UGP4 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIMD1Q9UGP4 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LIMD1Q9UGP4 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.97■□□□□ 0.95
LIMD1Q9UGP4 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.97■□□□□ 0.95
LIMD1Q9UGP4 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIMD1Q9UGP4 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIMD1Q9UGP4 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
LIMD1Q9UGP4 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC20.97■□□□□ 0.95
LIMD1Q9UGP4 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIMD1Q9UGP4 RNF146-204ENST00000476956 884 ntTSL 2 BASIC20.97■□□□□ 0.95
LIMD1Q9UGP4 F2R-202ENST00000505600 442 ntTSL 2 BASIC20.97■□□□□ 0.95
LIMD1Q9UGP4 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIMD1Q9UGP4 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC20.97■□□□□ 0.95
LIMD1Q9UGP4 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC20.97■□□□□ 0.95
LIMD1Q9UGP4 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC20.97■□□□□ 0.95
LIMD1Q9UGP4 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIMD1Q9UGP4 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIMD1Q9UGP4 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIMD1Q9UGP4 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIMD1Q9UGP4 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LIMD1Q9UGP4 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIMD1Q9UGP4 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIMD1Q9UGP4 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC20.97■□□□□ 0.95
LIMD1Q9UGP4 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LIMD1Q9UGP4 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
LIMD1Q9UGP4 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.96■□□□□ 0.95
LIMD1Q9UGP4 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIMD1Q9UGP4 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIMD1Q9UGP4 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIMD1Q9UGP4 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIMD1Q9UGP4 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
LIMD1Q9UGP4 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIMD1Q9UGP4 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.96■□□□□ 0.95
LIMD1Q9UGP4 UNC93B2-201ENST00000285383 730 ntBASIC20.96■□□□□ 0.95
LIMD1Q9UGP4 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
LIMD1Q9UGP4 MIR1238-201ENST00000408483 83 ntBASIC20.96■□□□□ 0.95
LIMD1Q9UGP4 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC20.96■□□□□ 0.95
LIMD1Q9UGP4 KRT18P57-201ENST00000443599 1254 ntBASIC20.96■□□□□ 0.95
LIMD1Q9UGP4 FDX2-207ENST00000494368 584 ntTSL 4 BASIC20.96■□□□□ 0.95
LIMD1Q9UGP4 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC20.96■□□□□ 0.95
LIMD1Q9UGP4 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC20.96■□□□□ 0.95
LIMD1Q9UGP4 NME3-204ENST00000563498 920 ntTSL 2 BASIC20.96■□□□□ 0.95
LIMD1Q9UGP4 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC20.96■□□□□ 0.95
LIMD1Q9UGP4 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIMD1Q9UGP4 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
LIMD1Q9UGP4 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIMD1Q9UGP4 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
LIMD1Q9UGP4 LINC01568-207ENST00000641790 1380 ntBASIC20.96■□□□□ 0.95
LIMD1Q9UGP4 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIMD1Q9UGP4 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIMD1Q9UGP4 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
LIMD1Q9UGP4 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIMD1Q9UGP4 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.95■□□□□ 0.94
LIMD1Q9UGP4 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIMD1Q9UGP4 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
LIMD1Q9UGP4 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC20.95■□□□□ 0.94
LIMD1Q9UGP4 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC20.95■□□□□ 0.94
LIMD1Q9UGP4 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC20.95■□□□□ 0.94
LIMD1Q9UGP4 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC20.95■□□□□ 0.94
LIMD1Q9UGP4 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC20.95■□□□□ 0.94
LIMD1Q9UGP4 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
LIMD1Q9UGP4 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIMD1Q9UGP4 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIMD1Q9UGP4 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
LIMD1Q9UGP4 AC124283.5-201ENST00000624661 1809 ntBASIC20.94■□□□□ 0.94
LIMD1Q9UGP4 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC20.94■□□□□ 0.94
LIMD1Q9UGP4 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
LIMD1Q9UGP4 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
LIMD1Q9UGP4 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
LIMD1Q9UGP4 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC20.94■□□□□ 0.94
LIMD1Q9UGP4 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC20.94■□□□□ 0.94
LIMD1Q9UGP4 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC20.94■□□□□ 0.94
LIMD1Q9UGP4 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC20.94■□□□□ 0.94
LIMD1Q9UGP4 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC20.94■□□□□ 0.94
LIMD1Q9UGP4 NUDT16P1-203ENST00000513809 620 ntBASIC20.94■□□□□ 0.94
LIMD1Q9UGP4 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC20.94■□□□□ 0.94
LIMD1Q9UGP4 REXO1L10P-201ENST00000615707 1290 ntBASIC20.94■□□□□ 0.94
LIMD1Q9UGP4 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
LIMD1Q9UGP4 GLDC-219ENST00000640208 420 ntTSL 2 BASIC20.94■□□□□ 0.94
LIMD1Q9UGP4 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
LIMD1Q9UGP4 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
LIMD1Q9UGP4 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
LIMD1Q9UGP4 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LIMD1Q9UGP4 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
LIMD1Q9UGP4 STK25-205ENST00000405883 1904 ntTSL 2 BASIC20.94■□□□□ 0.94
LIMD1Q9UGP4 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.94■□□□□ 0.94
LIMD1Q9UGP4 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.93■□□□□ 0.94
LIMD1Q9UGP4 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIMD1Q9UGP4 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LIMD1Q9UGP4 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.93■□□□□ 0.94
LIMD1Q9UGP4 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIMD1Q9UGP4 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIMD1Q9UGP4 CRAT-202ENST00000393384 973 ntTSL 2 BASIC20.93■□□□□ 0.94
LIMD1Q9UGP4 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC20.93■□□□□ 0.94
LIMD1Q9UGP4 DUT-205ENST00000558813 769 ntTSL 2 BASIC20.93■□□□□ 0.94
LIMD1Q9UGP4 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
LIMD1Q9UGP4 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms