Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.76■□□□□ 0.91
TDP1Q9NUW8 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC20.76■□□□□ 0.91
TDP1Q9NUW8 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC20.76■□□□□ 0.91
TDP1Q9NUW8 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TDP1Q9NUW8 F2R-202ENST00000505600 442 ntTSL 2 BASIC20.76■□□□□ 0.91
TDP1Q9NUW8 KRT8P20-201ENST00000423953 1409 ntBASIC20.76■□□□□ 0.91
TDP1Q9NUW8 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
TDP1Q9NUW8 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.76■□□□□ 0.91
TDP1Q9NUW8 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.76■□□□□ 0.91
TDP1Q9NUW8 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TDP1Q9NUW8 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TDP1Q9NUW8 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.75■□□□□ 0.91
TDP1Q9NUW8 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TDP1Q9NUW8 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TDP1Q9NUW8 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC20.75■□□□□ 0.91
TDP1Q9NUW8 PENK-204ENST00000518770 863 ntTSL 2 BASIC20.75■□□□□ 0.91
TDP1Q9NUW8 RPS20-210ENST00000523936 899 ntTSL 2 BASIC20.75■□□□□ 0.91
TDP1Q9NUW8 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TDP1Q9NUW8 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC20.75■□□□□ 0.91
TDP1Q9NUW8 AL031963.3-201ENST00000606441 850 ntBASIC20.75■□□□□ 0.91
TDP1Q9NUW8 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TDP1Q9NUW8 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TDP1Q9NUW8 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TDP1Q9NUW8 HTR7P1-201ENST00000538670 1336 ntBASIC20.75■□□□□ 0.91
TDP1Q9NUW8 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.75■□□□□ 0.91
TDP1Q9NUW8 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TDP1Q9NUW8 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TDP1Q9NUW8 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TDP1Q9NUW8 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TDP1Q9NUW8 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC20.74■□□□□ 0.91
TDP1Q9NUW8 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC20.74■□□□□ 0.91
TDP1Q9NUW8 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.74■□□□□ 0.91
TDP1Q9NUW8 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TDP1Q9NUW8 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
TDP1Q9NUW8 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TDP1Q9NUW8 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TDP1Q9NUW8 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
TDP1Q9NUW8 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TDP1Q9NUW8 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC20.74■□□□□ 0.91
TDP1Q9NUW8 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20.74■□□□□ 0.91
TDP1Q9NUW8 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC20.74■□□□□ 0.91
TDP1Q9NUW8 AF186192.3-201ENST00000583427 947 ntBASIC20.74■□□□□ 0.91
TDP1Q9NUW8 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
TDP1Q9NUW8 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TDP1Q9NUW8 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.74■□□□□ 0.91
TDP1Q9NUW8 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TDP1Q9NUW8 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
TDP1Q9NUW8 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
TDP1Q9NUW8 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
TDP1Q9NUW8 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.74■□□□□ 0.91
TDP1Q9NUW8 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TDP1Q9NUW8 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TDP1Q9NUW8 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TDP1Q9NUW8 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TDP1Q9NUW8 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TDP1Q9NUW8 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC20.73■□□□□ 0.91
TDP1Q9NUW8 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TDP1Q9NUW8 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
TDP1Q9NUW8 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TDP1Q9NUW8 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC20.73■□□□□ 0.91
TDP1Q9NUW8 SAPCD2P4-201ENST00000424595 1171 ntBASIC20.73■□□□□ 0.91
TDP1Q9NUW8 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC20.73■□□□□ 0.91
TDP1Q9NUW8 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC20.73■□□□□ 0.91
TDP1Q9NUW8 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC20.73■□□□□ 0.91
TDP1Q9NUW8 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
TDP1Q9NUW8 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC20.73■□□□□ 0.91
TDP1Q9NUW8 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TDP1Q9NUW8 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TDP1Q9NUW8 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC20.73■□□□□ 0.91
TDP1Q9NUW8 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
TDP1Q9NUW8 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TDP1Q9NUW8 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
TDP1Q9NUW8 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TDP1Q9NUW8 AL353807.1-201ENST00000427475 662 ntBASIC20.72■□□□□ 0.91
TDP1Q9NUW8 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC20.72■□□□□ 0.91
TDP1Q9NUW8 LINC01023-201ENST00000606054 436 ntBASIC20.72■□□□□ 0.91
TDP1Q9NUW8 AC004264.1-201ENST00000608354 794 ntBASIC20.72■□□□□ 0.91
TDP1Q9NUW8 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC20.72■□□□□ 0.91
TDP1Q9NUW8 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TDP1Q9NUW8 FP700111.2-201ENST00000619190 1892 ntBASIC20.72■□□□□ 0.91
TDP1Q9NUW8 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.72■□□□□ 0.91
TDP1Q9NUW8 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TDP1Q9NUW8 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
TDP1Q9NUW8 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TDP1Q9NUW8 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
TDP1Q9NUW8 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.72■□□□□ 0.91
TDP1Q9NUW8 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TDP1Q9NUW8 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TDP1Q9NUW8 KRT8P17-201ENST00000453110 1448 ntBASIC20.71■□□□□ 0.91
TDP1Q9NUW8 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
TDP1Q9NUW8 AC079834.2-201ENST00000609776 1949 ntBASIC20.71■□□□□ 0.91
TDP1Q9NUW8 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
TDP1Q9NUW8 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
TDP1Q9NUW8 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TDP1Q9NUW8 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TDP1Q9NUW8 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TDP1Q9NUW8 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TDP1Q9NUW8 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC20.71■□□□□ 0.91
TDP1Q9NUW8 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC20.71■□□□□ 0.91
TDP1Q9NUW8 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms