Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 UNC93B4-201ENST00000505679 747 ntBASIC19.89■□□□□ 0.77
TRIM39Q9HCM9 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM39Q9HCM9 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM39Q9HCM9 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
TRIM39Q9HCM9 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM39Q9HCM9 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.89■□□□□ 0.77
TRIM39Q9HCM9 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM39Q9HCM9 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM39Q9HCM9 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM39Q9HCM9 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM39Q9HCM9 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM39Q9HCM9 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.88■□□□□ 0.77
TRIM39Q9HCM9 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM39Q9HCM9 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.88■□□□□ 0.77
TRIM39Q9HCM9 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM39Q9HCM9 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC19.88■□□□□ 0.77
TRIM39Q9HCM9 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.88■□□□□ 0.77
TRIM39Q9HCM9 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM39Q9HCM9 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM39Q9HCM9 ESRRAP1-201ENST00000400596 1257 ntBASIC19.88■□□□□ 0.77
TRIM39Q9HCM9 POU5F1P3-201ENST00000428824 1078 ntBASIC19.88■□□□□ 0.77
TRIM39Q9HCM9 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.88■□□□□ 0.77
TRIM39Q9HCM9 FAM201B-201ENST00000458407 597 ntBASIC19.88■□□□□ 0.77
TRIM39Q9HCM9 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.88■□□□□ 0.77
TRIM39Q9HCM9 AC026366.1-201ENST00000488803 879 ntBASIC19.88■□□□□ 0.77
TRIM39Q9HCM9 MMAB-206ENST00000540016 945 ntTSL 3 BASIC19.88■□□□□ 0.77
TRIM39Q9HCM9 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC19.88■□□□□ 0.77
TRIM39Q9HCM9 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.88■□□□□ 0.77
TRIM39Q9HCM9 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC19.88■□□□□ 0.77
TRIM39Q9HCM9 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC19.88■□□□□ 0.77
TRIM39Q9HCM9 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
TRIM39Q9HCM9 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC19.88■□□□□ 0.77
TRIM39Q9HCM9 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
TRIM39Q9HCM9 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM39Q9HCM9 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM39Q9HCM9 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.88■□□□□ 0.77
TRIM39Q9HCM9 PTBP1P-201ENST00000554374 1601 ntBASIC19.87■□□□□ 0.77
TRIM39Q9HCM9 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM39Q9HCM9 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
TRIM39Q9HCM9 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM39Q9HCM9 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM39Q9HCM9 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM39Q9HCM9 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
TRIM39Q9HCM9 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM39Q9HCM9 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC19.87■□□□□ 0.77
TRIM39Q9HCM9 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC19.87■□□□□ 0.77
TRIM39Q9HCM9 AP003097.1-201ENST00000530657 1135 ntBASIC19.87■□□□□ 0.77
TRIM39Q9HCM9 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC19.87■□□□□ 0.77
TRIM39Q9HCM9 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM39Q9HCM9 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM39Q9HCM9 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM39Q9HCM9 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.87■□□□□ 0.77
TRIM39Q9HCM9 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC19.87■□□□□ 0.77
TRIM39Q9HCM9 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.87■□□□□ 0.77
TRIM39Q9HCM9 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
TRIM39Q9HCM9 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM39Q9HCM9 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM39Q9HCM9 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM39Q9HCM9 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC19.86■□□□□ 0.77
TRIM39Q9HCM9 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
TRIM39Q9HCM9 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM39Q9HCM9 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.86■□□□□ 0.77
TRIM39Q9HCM9 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM39Q9HCM9 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.86■□□□□ 0.77
TRIM39Q9HCM9 ABHD17AP1-201ENST00000358206 933 ntBASIC19.86■□□□□ 0.77
TRIM39Q9HCM9 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM39Q9HCM9 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM39Q9HCM9 ADM-205ENST00000528544 586 ntTSL 2 BASIC19.86■□□□□ 0.77
TRIM39Q9HCM9 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM39Q9HCM9 AC008403.3-201ENST00000598924 454 ntBASIC19.86■□□□□ 0.77
TRIM39Q9HCM9 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC19.86■□□□□ 0.77
TRIM39Q9HCM9 DPP3P2-201ENST00000416030 1696 ntBASIC19.86■□□□□ 0.77
TRIM39Q9HCM9 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM39Q9HCM9 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.86■□□□□ 0.77
TRIM39Q9HCM9 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM39Q9HCM9 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM39Q9HCM9 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.85■□□□□ 0.77
TRIM39Q9HCM9 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
TRIM39Q9HCM9 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
TRIM39Q9HCM9 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM39Q9HCM9 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM39Q9HCM9 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM39Q9HCM9 RER1-204ENST00000378518 522 ntTSL 3 BASIC19.85■□□□□ 0.77
TRIM39Q9HCM9 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
TRIM39Q9HCM9 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC19.85■□□□□ 0.77
TRIM39Q9HCM9 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC19.85■□□□□ 0.77
TRIM39Q9HCM9 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM39Q9HCM9 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM39Q9HCM9 SOX15-203ENST00000570788 1093 ntBASIC19.85■□□□□ 0.77
TRIM39Q9HCM9 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
TRIM39Q9HCM9 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM39Q9HCM9 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC19.85■□□□□ 0.77
TRIM39Q9HCM9 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM39Q9HCM9 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM39Q9HCM9 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM39Q9HCM9 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
TRIM39Q9HCM9 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM39Q9HCM9 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM39Q9HCM9 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM39Q9HCM9 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms