Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
VMP1Q96GC9 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC19.15■□□□□ 0.66
VMP1Q96GC9 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.15■□□□□ 0.66
VMP1Q96GC9 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
VMP1Q96GC9 AC087289.5-201ENST00000586076 3175 ntBASIC19.15■□□□□ 0.66
VMP1Q96GC9 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC19.15■□□□□ 0.66
VMP1Q96GC9 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
VMP1Q96GC9 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC19.15■□□□□ 0.66
VMP1Q96GC9 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
VMP1Q96GC9 MIPEPP3-201ENST00000412105 444 ntBASIC19.15■□□□□ 0.66
VMP1Q96GC9 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC19.15■□□□□ 0.66
VMP1Q96GC9 AL138781.1-201ENST00000566567 1274 ntBASIC19.15■□□□□ 0.66
VMP1Q96GC9 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC19.15■□□□□ 0.66
VMP1Q96GC9 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC19.15■□□□□ 0.66
VMP1Q96GC9 MIR4758-201ENST00000577688 71 ntBASIC19.15■□□□□ 0.66
VMP1Q96GC9 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC19.15■□□□□ 0.66
VMP1Q96GC9 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC19.15■□□□□ 0.66
VMP1Q96GC9 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
VMP1Q96GC9 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VMP1Q96GC9 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.15■□□□□ 0.66
VMP1Q96GC9 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
VMP1Q96GC9 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
VMP1Q96GC9 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VMP1Q96GC9 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VMP1Q96GC9 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
VMP1Q96GC9 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
VMP1Q96GC9 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.14■□□□□ 0.66
VMP1Q96GC9 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
VMP1Q96GC9 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.14■□□□□ 0.66
VMP1Q96GC9 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VMP1Q96GC9 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
VMP1Q96GC9 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VMP1Q96GC9 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VMP1Q96GC9 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VMP1Q96GC9 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
VMP1Q96GC9 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
VMP1Q96GC9 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
VMP1Q96GC9 BX276092.2-201ENST00000417668 665 ntBASIC19.14■□□□□ 0.65
VMP1Q96GC9 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.14■□□□□ 0.65
VMP1Q96GC9 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC19.14■□□□□ 0.65
VMP1Q96GC9 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
VMP1Q96GC9 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
VMP1Q96GC9 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VMP1Q96GC9 AFG3L1P-217ENST00000557444 2447 ntBASIC19.14■□□□□ 0.65
VMP1Q96GC9 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VMP1Q96GC9 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.14■□□□□ 0.65
VMP1Q96GC9 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
VMP1Q96GC9 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.14■□□□□ 0.65
VMP1Q96GC9 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VMP1Q96GC9 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC19.13■□□□□ 0.65
VMP1Q96GC9 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VMP1Q96GC9 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
VMP1Q96GC9 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VMP1Q96GC9 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VMP1Q96GC9 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC19.13■□□□□ 0.65
VMP1Q96GC9 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
VMP1Q96GC9 MCRIP2P1-201ENST00000394346 511 ntBASIC19.13■□□□□ 0.65
VMP1Q96GC9 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
VMP1Q96GC9 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.13■□□□□ 0.65
VMP1Q96GC9 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC19.13■□□□□ 0.65
VMP1Q96GC9 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC19.13■□□□□ 0.65
VMP1Q96GC9 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC19.13■□□□□ 0.65
VMP1Q96GC9 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC19.13■□□□□ 0.65
VMP1Q96GC9 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
VMP1Q96GC9 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.13■□□□□ 0.65
VMP1Q96GC9 AL049796.1-201ENST00000565336 1766 ntBASIC19.13■□□□□ 0.65
VMP1Q96GC9 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
VMP1Q96GC9 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
VMP1Q96GC9 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VMP1Q96GC9 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC19.13■□□□□ 0.65
VMP1Q96GC9 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
VMP1Q96GC9 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
VMP1Q96GC9 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC19.12■□□□□ 0.65
VMP1Q96GC9 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.12■□□□□ 0.65
VMP1Q96GC9 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.12■□□□□ 0.65
VMP1Q96GC9 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VMP1Q96GC9 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VMP1Q96GC9 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
VMP1Q96GC9 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
VMP1Q96GC9 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC19.12■□□□□ 0.65
VMP1Q96GC9 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
VMP1Q96GC9 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC19.12■□□□□ 0.65
VMP1Q96GC9 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC19.12■□□□□ 0.65
VMP1Q96GC9 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VMP1Q96GC9 AC092118.2-201ENST00000613495 667 ntBASIC19.12■□□□□ 0.65
VMP1Q96GC9 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC19.12■□□□□ 0.65
VMP1Q96GC9 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC19.12■□□□□ 0.65
VMP1Q96GC9 AC133041.1-202ENST00000642053 222 ntBASIC19.12■□□□□ 0.65
VMP1Q96GC9 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VMP1Q96GC9 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
VMP1Q96GC9 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VMP1Q96GC9 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.12■□□□□ 0.65
VMP1Q96GC9 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
VMP1Q96GC9 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VMP1Q96GC9 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.12■□□□□ 0.65
VMP1Q96GC9 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC19.12■□□□□ 0.65
VMP1Q96GC9 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VMP1Q96GC9 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.12■□□□□ 0.65
VMP1Q96GC9 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.12■□□□□ 0.65
VMP1Q96GC9 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms