Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC20.21■□□□□ 0.83
HDDC3Q8N4P3 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC20.21■□□□□ 0.83
HDDC3Q8N4P3 AL049637.2-201ENST00000641778 930 ntBASIC20.21■□□□□ 0.83
HDDC3Q8N4P3 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
HDDC3Q8N4P3 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
HDDC3Q8N4P3 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.2■□□□□ 0.83
HDDC3Q8N4P3 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
HDDC3Q8N4P3 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
HDDC3Q8N4P3 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HDDC3Q8N4P3 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HDDC3Q8N4P3 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.2■□□□□ 0.82
HDDC3Q8N4P3 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
HDDC3Q8N4P3 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.2■□□□□ 0.82
HDDC3Q8N4P3 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
HDDC3Q8N4P3 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC20.2■□□□□ 0.82
HDDC3Q8N4P3 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
HDDC3Q8N4P3 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
HDDC3Q8N4P3 AC133681.1-201ENST00000465482 601 ntBASIC20.2■□□□□ 0.82
HDDC3Q8N4P3 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HDDC3Q8N4P3 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC20.2■□□□□ 0.82
HDDC3Q8N4P3 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC20.2■□□□□ 0.82
HDDC3Q8N4P3 REXO2-216ENST00000544196 452 ntTSL 3 BASIC20.2■□□□□ 0.82
HDDC3Q8N4P3 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HDDC3Q8N4P3 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC20.2■□□□□ 0.82
HDDC3Q8N4P3 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
HDDC3Q8N4P3 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
HDDC3Q8N4P3 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
HDDC3Q8N4P3 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HDDC3Q8N4P3 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HDDC3Q8N4P3 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
HDDC3Q8N4P3 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.19■□□□□ 0.82
HDDC3Q8N4P3 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
HDDC3Q8N4P3 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.19■□□□□ 0.82
HDDC3Q8N4P3 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HDDC3Q8N4P3 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HDDC3Q8N4P3 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.19■□□□□ 0.82
HDDC3Q8N4P3 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
HDDC3Q8N4P3 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
HDDC3Q8N4P3 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HDDC3Q8N4P3 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
HDDC3Q8N4P3 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HDDC3Q8N4P3 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HDDC3Q8N4P3 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC20.19■□□□□ 0.82
HDDC3Q8N4P3 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC20.19■□□□□ 0.82
HDDC3Q8N4P3 PRKY-204ENST00000533551 1019 ntBASIC20.19■□□□□ 0.82
HDDC3Q8N4P3 AC110285.5-201ENST00000611501 352 ntBASIC20.19■□□□□ 0.82
HDDC3Q8N4P3 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HDDC3Q8N4P3 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HDDC3Q8N4P3 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
HDDC3Q8N4P3 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC20.19■□□□□ 0.82
HDDC3Q8N4P3 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HDDC3Q8N4P3 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HDDC3Q8N4P3 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HDDC3Q8N4P3 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC20.18■□□□□ 0.82
HDDC3Q8N4P3 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
HDDC3Q8N4P3 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
HDDC3Q8N4P3 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
HDDC3Q8N4P3 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
HDDC3Q8N4P3 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.18■□□□□ 0.82
HDDC3Q8N4P3 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HDDC3Q8N4P3 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
HDDC3Q8N4P3 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.18■□□□□ 0.82
HDDC3Q8N4P3 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HDDC3Q8N4P3 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC20.17■□□□□ 0.82
HDDC3Q8N4P3 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.17■□□□□ 0.82
HDDC3Q8N4P3 AL121603.2-201ENST00000557373 2117 ntBASIC20.17■□□□□ 0.82
HDDC3Q8N4P3 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HDDC3Q8N4P3 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC20.17■□□□□ 0.82
HDDC3Q8N4P3 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HDDC3Q8N4P3 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
HDDC3Q8N4P3 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
HDDC3Q8N4P3 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC20.17■□□□□ 0.82
HDDC3Q8N4P3 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC20.17■□□□□ 0.82
HDDC3Q8N4P3 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC20.17■□□□□ 0.82
HDDC3Q8N4P3 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HDDC3Q8N4P3 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
HDDC3Q8N4P3 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HDDC3Q8N4P3 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HDDC3Q8N4P3 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC20.17■□□□□ 0.82
HDDC3Q8N4P3 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HDDC3Q8N4P3 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HDDC3Q8N4P3 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
HDDC3Q8N4P3 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
HDDC3Q8N4P3 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HDDC3Q8N4P3 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
HDDC3Q8N4P3 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.16■□□□□ 0.82
HDDC3Q8N4P3 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
HDDC3Q8N4P3 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HDDC3Q8N4P3 AC087499.1-201ENST00000418141 1075 ntBASIC20.16■□□□□ 0.82
HDDC3Q8N4P3 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC20.16■□□□□ 0.82
HDDC3Q8N4P3 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
HDDC3Q8N4P3 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC20.16■□□□□ 0.82
HDDC3Q8N4P3 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
HDDC3Q8N4P3 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HDDC3Q8N4P3 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.16■□□□□ 0.82
HDDC3Q8N4P3 AC124283.5-201ENST00000624661 1809 ntBASIC20.16■□□□□ 0.82
HDDC3Q8N4P3 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
HDDC3Q8N4P3 FP700111.2-201ENST00000619190 1892 ntBASIC20.16■□□□□ 0.82
HDDC3Q8N4P3 AC026310.3-201ENST00000625186 2373 ntBASIC20.15■□□□□ 0.82
HDDC3Q8N4P3 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms