Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC16.84■□□□□ 0.29
VPS13CQ709C8 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VPS13CQ709C8 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC16.84■□□□□ 0.29
VPS13CQ709C8 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS13CQ709C8 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS13CQ709C8 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VPS13CQ709C8 CLN6-204ENST00000564752 900 ntTSL 3 BASIC16.84■□□□□ 0.29
VPS13CQ709C8 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC16.84■□□□□ 0.29
VPS13CQ709C8 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS13CQ709C8 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS13CQ709C8 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
VPS13CQ709C8 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VPS13CQ709C8 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
VPS13CQ709C8 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VPS13CQ709C8 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS13CQ709C8 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS13CQ709C8 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS13CQ709C8 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS13CQ709C8 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS13CQ709C8 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS13CQ709C8 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS13CQ709C8 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC16.84■□□□□ 0.29
VPS13CQ709C8 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC16.84■□□□□ 0.29
VPS13CQ709C8 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS13CQ709C8 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS13CQ709C8 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS13CQ709C8 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VPS13CQ709C8 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC16.83■□□□□ 0.29
VPS13CQ709C8 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
VPS13CQ709C8 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
VPS13CQ709C8 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.29
VPS13CQ709C8 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
VPS13CQ709C8 AL031133.1-201ENST00000406807 723 ntBASIC16.83■□□□□ 0.29
VPS13CQ709C8 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
VPS13CQ709C8 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC16.83■□□□□ 0.29
VPS13CQ709C8 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
VPS13CQ709C8 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC16.83■□□□□ 0.28
VPS13CQ709C8 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS13CQ709C8 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS13CQ709C8 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS13CQ709C8 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS13CQ709C8 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC16.83■□□□□ 0.28
VPS13CQ709C8 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC16.83■□□□□ 0.28
VPS13CQ709C8 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
VPS13CQ709C8 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS13CQ709C8 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS13CQ709C8 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS13CQ709C8 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS13CQ709C8 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS13CQ709C8 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
VPS13CQ709C8 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS13CQ709C8 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC16.83■□□□□ 0.28
VPS13CQ709C8 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC16.83■□□□□ 0.28
VPS13CQ709C8 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS13CQ709C8 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
VPS13CQ709C8 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC16.83■□□□□ 0.28
VPS13CQ709C8 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
VPS13CQ709C8 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS13CQ709C8 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS13CQ709C8 AC116562.2-201ENST00000507042 360 ntBASIC16.82■□□□□ 0.28
VPS13CQ709C8 AL031963.3-201ENST00000606441 850 ntBASIC16.82■□□□□ 0.28
VPS13CQ709C8 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC16.82■□□□□ 0.28
VPS13CQ709C8 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC16.82■□□□□ 0.28
VPS13CQ709C8 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS13CQ709C8 AC233723.2-201ENST00000623798 2106 ntBASIC16.82■□□□□ 0.28
VPS13CQ709C8 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS13CQ709C8 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC16.82■□□□□ 0.28
VPS13CQ709C8 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS13CQ709C8 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS13CQ709C8 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC16.82■□□□□ 0.28
VPS13CQ709C8 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC16.82■□□□□ 0.28
VPS13CQ709C8 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS13CQ709C8 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS13CQ709C8 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS13CQ709C8 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VPS13CQ709C8 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC16.81■□□□□ 0.28
VPS13CQ709C8 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC16.81■□□□□ 0.28
VPS13CQ709C8 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC16.81■□□□□ 0.28
VPS13CQ709C8 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS13CQ709C8 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS13CQ709C8 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VPS13CQ709C8 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS13CQ709C8 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS13CQ709C8 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS13CQ709C8 PPP1R14BP5-201ENST00000440334 435 ntBASIC16.81■□□□□ 0.28
VPS13CQ709C8 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS13CQ709C8 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC16.81■□□□□ 0.28
VPS13CQ709C8 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS13CQ709C8 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC16.81■□□□□ 0.28
VPS13CQ709C8 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC16.81■□□□□ 0.28
VPS13CQ709C8 GOLGA2P6-201ENST00000340929 2049 ntBASIC16.8■□□□□ 0.28
VPS13CQ709C8 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
VPS13CQ709C8 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS13CQ709C8 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS13CQ709C8 KRT126P-201ENST00000549467 1181 ntBASIC16.8■□□□□ 0.28
VPS13CQ709C8 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VPS13CQ709C8 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC16.8■□□□□ 0.28
VPS13CQ709C8 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC16.8■□□□□ 0.28
VPS13CQ709C8 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC16.8■□□□□ 0.28
VPS13CQ709C8 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms