Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 TSPY6P-201ENST00000448518 926 ntBASIC19.27■□□□□ 0.68
TRIM40Q6P9F5 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC19.27■□□□□ 0.68
TRIM40Q6P9F5 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC19.27■□□□□ 0.68
TRIM40Q6P9F5 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
TRIM40Q6P9F5 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM40Q6P9F5 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM40Q6P9F5 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.27■□□□□ 0.68
TRIM40Q6P9F5 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.27■□□□□ 0.68
TRIM40Q6P9F5 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM40Q6P9F5 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM40Q6P9F5 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
TRIM40Q6P9F5 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
TRIM40Q6P9F5 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
TRIM40Q6P9F5 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
TRIM40Q6P9F5 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
TRIM40Q6P9F5 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.26■□□□□ 0.67
TRIM40Q6P9F5 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.26■□□□□ 0.67
TRIM40Q6P9F5 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM40Q6P9F5 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM40Q6P9F5 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM40Q6P9F5 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM40Q6P9F5 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.26■□□□□ 0.67
TRIM40Q6P9F5 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM40Q6P9F5 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.26■□□□□ 0.67
TRIM40Q6P9F5 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM40Q6P9F5 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM40Q6P9F5 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM40Q6P9F5 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM40Q6P9F5 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC19.26■□□□□ 0.67
TRIM40Q6P9F5 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC19.26■□□□□ 0.67
TRIM40Q6P9F5 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
TRIM40Q6P9F5 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC19.26■□□□□ 0.67
TRIM40Q6P9F5 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC19.26■□□□□ 0.67
TRIM40Q6P9F5 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC19.26■□□□□ 0.67
TRIM40Q6P9F5 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM40Q6P9F5 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM40Q6P9F5 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.26■□□□□ 0.67
TRIM40Q6P9F5 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
TRIM40Q6P9F5 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM40Q6P9F5 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM40Q6P9F5 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC19.25■□□□□ 0.67
TRIM40Q6P9F5 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM40Q6P9F5 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.25■□□□□ 0.67
TRIM40Q6P9F5 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM40Q6P9F5 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM40Q6P9F5 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM40Q6P9F5 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM40Q6P9F5 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM40Q6P9F5 AL162377.1-201ENST00000618844 1793 ntBASIC19.25■□□□□ 0.67
TRIM40Q6P9F5 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.25■□□□□ 0.67
TRIM40Q6P9F5 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM40Q6P9F5 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM40Q6P9F5 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM40Q6P9F5 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM40Q6P9F5 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC19.25■□□□□ 0.67
TRIM40Q6P9F5 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
TRIM40Q6P9F5 MIPEPP3-201ENST00000412105 444 ntBASIC19.25■□□□□ 0.67
TRIM40Q6P9F5 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC19.25■□□□□ 0.67
TRIM40Q6P9F5 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC19.25■□□□□ 0.67
TRIM40Q6P9F5 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM40Q6P9F5 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC19.25■□□□□ 0.67
TRIM40Q6P9F5 AL109923.1-201ENST00000618799 583 ntBASIC19.25■□□□□ 0.67
TRIM40Q6P9F5 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM40Q6P9F5 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
TRIM40Q6P9F5 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM40Q6P9F5 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.25■□□□□ 0.67
TRIM40Q6P9F5 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM40Q6P9F5 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM40Q6P9F5 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM40Q6P9F5 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC19.24■□□□□ 0.67
TRIM40Q6P9F5 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM40Q6P9F5 GUSBP6-202ENST00000438529 1198 ntBASIC19.24■□□□□ 0.67
TRIM40Q6P9F5 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC19.24■□□□□ 0.67
TRIM40Q6P9F5 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
TRIM40Q6P9F5 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM40Q6P9F5 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC19.24■□□□□ 0.67
TRIM40Q6P9F5 PFKL-212ENST00000628044 129 ntTSL 3 BASIC19.24■□□□□ 0.67
TRIM40Q6P9F5 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM40Q6P9F5 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM40Q6P9F5 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM40Q6P9F5 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.24■□□□□ 0.67
TRIM40Q6P9F5 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
TRIM40Q6P9F5 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM40Q6P9F5 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
TRIM40Q6P9F5 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM40Q6P9F5 NXN-202ENST00000537628 1340 ntTSL 3 BASIC19.24■□□□□ 0.67
TRIM40Q6P9F5 DPP3P2-201ENST00000416030 1696 ntBASIC19.24■□□□□ 0.67
TRIM40Q6P9F5 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.24■□□□□ 0.67
TRIM40Q6P9F5 AL512408.1-201ENST00000569378 2000 ntBASIC19.24■□□□□ 0.67
TRIM40Q6P9F5 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM40Q6P9F5 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.23■□□□□ 0.67
TRIM40Q6P9F5 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM40Q6P9F5 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM40Q6P9F5 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
TRIM40Q6P9F5 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM40Q6P9F5 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM40Q6P9F5 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC19.23■□□□□ 0.67
TRIM40Q6P9F5 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC19.23■□□□□ 0.67
TRIM40Q6P9F5 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC19.23■□□□□ 0.67
TRIM40Q6P9F5 BRWD1-AS2-201ENST00000603064 1028 ntBASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms