Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
KRT40Q6A162 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC23.27■■□□□ 1.32
KRT40Q6A162 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC23.27■■□□□ 1.32
KRT40Q6A162 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
KRT40Q6A162 KRT17P1-201ENST00000399211 1546 ntBASIC23.27■■□□□ 1.32
KRT40Q6A162 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC23.27■■□□□ 1.32
KRT40Q6A162 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC23.26■■□□□ 1.31
KRT40Q6A162 TCF3P1-201ENST00000423021 1937 ntBASIC23.26■■□□□ 1.31
KRT40Q6A162 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC23.26■■□□□ 1.31
KRT40Q6A162 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
KRT40Q6A162 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
KRT40Q6A162 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC23.26■■□□□ 1.31
KRT40Q6A162 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC23.26■■□□□ 1.31
KRT40Q6A162 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC23.26■■□□□ 1.31
KRT40Q6A162 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
KRT40Q6A162 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
KRT40Q6A162 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
KRT40Q6A162 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC23.26■■□□□ 1.31
KRT40Q6A162 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC23.26■■□□□ 1.31
KRT40Q6A162 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
KRT40Q6A162 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC23.26■■□□□ 1.31
KRT40Q6A162 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
KRT40Q6A162 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
KRT40Q6A162 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC23.25■■□□□ 1.31
KRT40Q6A162 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC23.25■■□□□ 1.31
KRT40Q6A162 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
KRT40Q6A162 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC23.25■■□□□ 1.31
KRT40Q6A162 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
KRT40Q6A162 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
KRT40Q6A162 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
KRT40Q6A162 AC098590.1-201ENST00000468126 897 ntBASIC23.25■■□□□ 1.31
KRT40Q6A162 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC23.25■■□□□ 1.31
KRT40Q6A162 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
KRT40Q6A162 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
KRT40Q6A162 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC23.25■■□□□ 1.31
KRT40Q6A162 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC23.25■■□□□ 1.31
KRT40Q6A162 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
KRT40Q6A162 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
KRT40Q6A162 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
KRT40Q6A162 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC23.25■■□□□ 1.31
KRT40Q6A162 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
KRT40Q6A162 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
KRT40Q6A162 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
KRT40Q6A162 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC23.24■■□□□ 1.31
KRT40Q6A162 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
KRT40Q6A162 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
KRT40Q6A162 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC23.24■■□□□ 1.31
KRT40Q6A162 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
KRT40Q6A162 PTBP1P-201ENST00000554374 1601 ntBASIC23.24■■□□□ 1.31
KRT40Q6A162 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
KRT40Q6A162 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC23.24■■□□□ 1.31
KRT40Q6A162 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC23.24■■□□□ 1.31
KRT40Q6A162 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC23.24■■□□□ 1.31
KRT40Q6A162 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC23.24■■□□□ 1.31
KRT40Q6A162 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC23.24■■□□□ 1.31
KRT40Q6A162 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC23.24■■□□□ 1.31
KRT40Q6A162 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
KRT40Q6A162 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC23.24■■□□□ 1.31
KRT40Q6A162 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC23.24■■□□□ 1.31
KRT40Q6A162 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
KRT40Q6A162 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
KRT40Q6A162 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC23.23■■□□□ 1.31
KRT40Q6A162 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
KRT40Q6A162 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC23.23■■□□□ 1.31
KRT40Q6A162 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC23.23■■□□□ 1.31
KRT40Q6A162 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC23.23■■□□□ 1.31
KRT40Q6A162 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC23.23■■□□□ 1.31
KRT40Q6A162 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
KRT40Q6A162 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC23.23■■□□□ 1.31
KRT40Q6A162 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
KRT40Q6A162 MARS-234ENST00000630571 216 ntTSL 5 BASIC23.23■■□□□ 1.31
KRT40Q6A162 MARS-235ENST00000630803 183 ntTSL 3 BASIC23.23■■□□□ 1.31
KRT40Q6A162 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC23.23■■□□□ 1.31
KRT40Q6A162 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
KRT40Q6A162 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC23.23■■□□□ 1.31
KRT40Q6A162 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
KRT40Q6A162 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC23.23■■□□□ 1.31
KRT40Q6A162 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
KRT40Q6A162 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
KRT40Q6A162 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
KRT40Q6A162 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
KRT40Q6A162 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC23.22■■□□□ 1.31
KRT40Q6A162 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
KRT40Q6A162 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC23.22■■□□□ 1.31
KRT40Q6A162 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC23.22■■□□□ 1.31
KRT40Q6A162 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
KRT40Q6A162 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
KRT40Q6A162 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
KRT40Q6A162 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
KRT40Q6A162 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC23.21■■□□□ 1.31
KRT40Q6A162 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
KRT40Q6A162 AFG3L1P-217ENST00000557444 2447 ntBASIC23.21■■□□□ 1.31
KRT40Q6A162 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC23.21■■□□□ 1.31
KRT40Q6A162 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
KRT40Q6A162 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
KRT40Q6A162 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC23.21■■□□□ 1.31
KRT40Q6A162 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC23.21■■□□□ 1.31
KRT40Q6A162 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC23.21■■□□□ 1.31
KRT40Q6A162 AL589743.5-201ENST00000616611 1050 ntBASIC23.21■■□□□ 1.31
KRT40Q6A162 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms