Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC13.61□□□□□ -0.23
VPS13DQ5THJ4 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13DQ5THJ4 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13DQ5THJ4 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13DQ5THJ4 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC13.6□□□□□ -0.23
VPS13DQ5THJ4 KRT18P56-201ENST00000507275 550 ntBASIC13.6□□□□□ -0.23
VPS13DQ5THJ4 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC13.6□□□□□ -0.23
VPS13DQ5THJ4 LGALS8-AS1-201ENST00000487567 1457 ntBASIC13.6□□□□□ -0.23
VPS13DQ5THJ4 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13DQ5THJ4 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC13.6□□□□□ -0.23
VPS13DQ5THJ4 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13DQ5THJ4 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13DQ5THJ4 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13DQ5THJ4 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC13.6□□□□□ -0.23
VPS13DQ5THJ4 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC13.6□□□□□ -0.23
VPS13DQ5THJ4 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC13.6□□□□□ -0.23
VPS13DQ5THJ4 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13DQ5THJ4 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC13.6□□□□□ -0.23
VPS13DQ5THJ4 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC13.6□□□□□ -0.23
VPS13DQ5THJ4 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC13.6□□□□□ -0.23
VPS13DQ5THJ4 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC13.6□□□□□ -0.23
VPS13DQ5THJ4 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC13.6□□□□□ -0.23
VPS13DQ5THJ4 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13DQ5THJ4 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13DQ5THJ4 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13DQ5THJ4 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13DQ5THJ4 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
VPS13DQ5THJ4 CRYGFP-201ENST00000418459 633 ntBASIC13.6□□□□□ -0.23
VPS13DQ5THJ4 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC13.6□□□□□ -0.23
VPS13DQ5THJ4 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC13.6□□□□□ -0.23
VPS13DQ5THJ4 FAM87A-204ENST00000613235 858 ntBASIC13.6□□□□□ -0.23
VPS13DQ5THJ4 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC13.59□□□□□ -0.23
VPS13DQ5THJ4 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC13.59□□□□□ -0.23
VPS13DQ5THJ4 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13DQ5THJ4 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC13.59□□□□□ -0.23
VPS13DQ5THJ4 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13DQ5THJ4 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
VPS13DQ5THJ4 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
VPS13DQ5THJ4 TMA16-209ENST00000513272 803 ntTSL 2 BASIC13.59□□□□□ -0.23
VPS13DQ5THJ4 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
VPS13DQ5THJ4 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13DQ5THJ4 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13DQ5THJ4 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13DQ5THJ4 AC027702.1-201ENST00000563810 1770 ntBASIC13.59□□□□□ -0.23
VPS13DQ5THJ4 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13DQ5THJ4 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13DQ5THJ4 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC13.59□□□□□ -0.23
VPS13DQ5THJ4 AL031985.4-201ENST00000642138 673 ntBASIC13.59□□□□□ -0.23
VPS13DQ5THJ4 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC13.59□□□□□ -0.23
VPS13DQ5THJ4 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13DQ5THJ4 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13DQ5THJ4 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
VPS13DQ5THJ4 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC13.59□□□□□ -0.23
VPS13DQ5THJ4 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
VPS13DQ5THJ4 BET1L-202ENST00000332865 533 ntTSL 5 BASIC13.58□□□□□ -0.23
VPS13DQ5THJ4 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC13.58□□□□□ -0.23
VPS13DQ5THJ4 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC13.58□□□□□ -0.23
VPS13DQ5THJ4 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
VPS13DQ5THJ4 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13DQ5THJ4 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC13.58□□□□□ -0.24
VPS13DQ5THJ4 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13DQ5THJ4 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13DQ5THJ4 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13DQ5THJ4 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC13.58□□□□□ -0.24
VPS13DQ5THJ4 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC13.58□□□□□ -0.24
VPS13DQ5THJ4 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13DQ5THJ4 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
VPS13DQ5THJ4 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13DQ5THJ4 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13DQ5THJ4 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13DQ5THJ4 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13DQ5THJ4 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC13.58□□□□□ -0.24
VPS13DQ5THJ4 MYC-208ENST00000641036 567 ntBASIC13.58□□□□□ -0.24
VPS13DQ5THJ4 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
VPS13DQ5THJ4 AC233723.2-201ENST00000623798 2106 ntBASIC13.58□□□□□ -0.24
VPS13DQ5THJ4 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13DQ5THJ4 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13DQ5THJ4 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13DQ5THJ4 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC13.58□□□□□ -0.24
VPS13DQ5THJ4 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
VPS13DQ5THJ4 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC13.58□□□□□ -0.24
VPS13DQ5THJ4 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC13.58□□□□□ -0.24
VPS13DQ5THJ4 AL121906.2-201ENST00000621597 723 ntBASIC13.58□□□□□ -0.24
VPS13DQ5THJ4 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13DQ5THJ4 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
VPS13DQ5THJ4 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
VPS13DQ5THJ4 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC13.58□□□□□ -0.24
VPS13DQ5THJ4 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13DQ5THJ4 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13DQ5THJ4 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC13.57□□□□□ -0.24
VPS13DQ5THJ4 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13DQ5THJ4 BX664615.1-201ENST00000443558 458 ntBASIC13.57□□□□□ -0.24
VPS13DQ5THJ4 TOLLIP-AS1-201ENST00000530897 939 ntBASIC13.57□□□□□ -0.24
VPS13DQ5THJ4 LTBR-211ENST00000543190 785 ntTSL 3 BASIC13.57□□□□□ -0.24
VPS13DQ5THJ4 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13DQ5THJ4 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC13.57□□□□□ -0.24
VPS13DQ5THJ4 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13DQ5THJ4 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC13.57□□□□□ -0.24
VPS13DQ5THJ4 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
VPS13DQ5THJ4 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC13.57□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 10.9 ms