Protein–RNA interactions for Protein: P61009

SPCS3, Signal peptidase complex subunit 3, humanhuman

Predictions only

Length 180 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPCS3P61009 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SPCS3P61009 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
SPCS3P61009 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SPCS3P61009 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SPCS3P61009 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
SPCS3P61009 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SPCS3P61009 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
SPCS3P61009 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
SPCS3P61009 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SPCS3P61009 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
SPCS3P61009 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SPCS3P61009 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SPCS3P61009 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC16.27■□□□□ 0.2
SPCS3P61009 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC16.27■□□□□ 0.2
SPCS3P61009 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
SPCS3P61009 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SPCS3P61009 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
SPCS3P61009 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
SPCS3P61009 AL031432.3-201ENST00000607698 485 ntBASIC16.27■□□□□ 0.2
SPCS3P61009 AC110285.6-201ENST00000617652 491 ntBASIC16.27■□□□□ 0.2
SPCS3P61009 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
SPCS3P61009 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SPCS3P61009 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
SPCS3P61009 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC16.27■□□□□ 0.19
SPCS3P61009 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SPCS3P61009 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC16.27■□□□□ 0.19
SPCS3P61009 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC16.27■□□□□ 0.19
SPCS3P61009 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
SPCS3P61009 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.19
SPCS3P61009 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SPCS3P61009 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SPCS3P61009 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SPCS3P61009 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SPCS3P61009 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SPCS3P61009 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SPCS3P61009 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC16.26■□□□□ 0.19
SPCS3P61009 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SPCS3P61009 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SPCS3P61009 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC16.26■□□□□ 0.19
SPCS3P61009 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
SPCS3P61009 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC16.26■□□□□ 0.19
SPCS3P61009 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC16.26■□□□□ 0.19
SPCS3P61009 DUX4L2-201ENST00000561772 1275 ntBASIC16.26■□□□□ 0.19
SPCS3P61009 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC16.26■□□□□ 0.19
SPCS3P61009 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC16.26■□□□□ 0.19
SPCS3P61009 DUX4L6-201ENST00000626483 1275 ntBASIC16.26■□□□□ 0.19
SPCS3P61009 DUX4L1-201ENST00000627662 1275 ntBASIC16.26■□□□□ 0.19
SPCS3P61009 DUX4L8-201ENST00000629013 1275 ntBASIC16.26■□□□□ 0.19
SPCS3P61009 DUX4L3-201ENST00000630187 1275 ntBASIC16.26■□□□□ 0.19
SPCS3P61009 DUX4L7-201ENST00000630678 1275 ntBASIC16.26■□□□□ 0.19
SPCS3P61009 DUX4L5-201ENST00000630834 1275 ntBASIC16.26■□□□□ 0.19
SPCS3P61009 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC16.26■□□□□ 0.19
SPCS3P61009 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SPCS3P61009 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SPCS3P61009 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SPCS3P61009 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SPCS3P61009 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SPCS3P61009 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SPCS3P61009 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SPCS3P61009 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SPCS3P61009 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SPCS3P61009 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC16.26■□□□□ 0.19
SPCS3P61009 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SPCS3P61009 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC16.26■□□□□ 0.19
SPCS3P61009 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC16.26■□□□□ 0.19
SPCS3P61009 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC16.26■□□□□ 0.19
SPCS3P61009 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SPCS3P61009 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SPCS3P61009 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
SPCS3P61009 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
SPCS3P61009 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SPCS3P61009 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC16.25■□□□□ 0.19
SPCS3P61009 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
SPCS3P61009 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC16.25■□□□□ 0.19
SPCS3P61009 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SPCS3P61009 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SPCS3P61009 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SPCS3P61009 IRS3P-201ENST00000223076 1006 ntBASIC16.25■□□□□ 0.19
SPCS3P61009 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SPCS3P61009 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SPCS3P61009 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SPCS3P61009 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC16.25■□□□□ 0.19
SPCS3P61009 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SPCS3P61009 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC16.25■□□□□ 0.19
SPCS3P61009 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC16.25■□□□□ 0.19
SPCS3P61009 MIR6084-201ENST00000622012 110 ntBASIC16.25■□□□□ 0.19
SPCS3P61009 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SPCS3P61009 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC16.25■□□□□ 0.19
SPCS3P61009 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SPCS3P61009 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
SPCS3P61009 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SPCS3P61009 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SPCS3P61009 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC16.25■□□□□ 0.19
SPCS3P61009 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SPCS3P61009 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SPCS3P61009 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SPCS3P61009 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SPCS3P61009 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC16.24■□□□□ 0.19
SPCS3P61009 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC16.24■□□□□ 0.19
SPCS3P61009 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms