Protein–RNA interactions for Protein: P58304

VSX2, Visual system homeobox 2, humanhuman

Predicted RBP Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX2P58304 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VSX2P58304 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VSX2P58304 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
VSX2P58304 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VSX2P58304 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
VSX2P58304 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
VSX2P58304 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VSX2P58304 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VSX2P58304 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VSX2P58304 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VSX2P58304 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
VSX2P58304 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC19.2■□□□□ 0.66
VSX2P58304 ADM-205ENST00000528544 586 ntTSL 2 BASIC19.2■□□□□ 0.66
VSX2P58304 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VSX2P58304 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC19.2■□□□□ 0.66
VSX2P58304 AC008403.3-201ENST00000598924 454 ntBASIC19.2■□□□□ 0.66
VSX2P58304 AC006058.3-201ENST00000606217 1069 ntBASIC19.2■□□□□ 0.66
VSX2P58304 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VSX2P58304 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VSX2P58304 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
VSX2P58304 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
VSX2P58304 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VSX2P58304 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VSX2P58304 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VSX2P58304 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VSX2P58304 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.19■□□□□ 0.66
VSX2P58304 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
VSX2P58304 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
VSX2P58304 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VSX2P58304 KRT18P29-201ENST00000397031 1267 ntBASIC19.19■□□□□ 0.66
VSX2P58304 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.19■□□□□ 0.66
VSX2P58304 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VSX2P58304 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC19.19■□□□□ 0.66
VSX2P58304 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC19.19■□□□□ 0.66
VSX2P58304 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
VSX2P58304 TMEM191A-211ENST00000637163 1067 ntBASIC19.19■□□□□ 0.66
VSX2P58304 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VSX2P58304 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.19■□□□□ 0.66
VSX2P58304 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VSX2P58304 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
VSX2P58304 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VSX2P58304 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC19.19■□□□□ 0.66
VSX2P58304 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VSX2P58304 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.19■□□□□ 0.66
VSX2P58304 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VSX2P58304 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VSX2P58304 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.18■□□□□ 0.66
VSX2P58304 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
VSX2P58304 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
VSX2P58304 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VSX2P58304 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VSX2P58304 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VSX2P58304 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC19.18■□□□□ 0.66
VSX2P58304 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC19.18■□□□□ 0.66
VSX2P58304 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VSX2P58304 AC023632.3-201ENST00000521633 145 ntBASIC19.18■□□□□ 0.66
VSX2P58304 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.18■□□□□ 0.66
VSX2P58304 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
VSX2P58304 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VSX2P58304 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VSX2P58304 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
VSX2P58304 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC19.17■□□□□ 0.66
VSX2P58304 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
VSX2P58304 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
VSX2P58304 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VSX2P58304 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC19.17■□□□□ 0.66
VSX2P58304 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VSX2P58304 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VSX2P58304 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VSX2P58304 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
VSX2P58304 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VSX2P58304 RER1-204ENST00000378518 522 ntTSL 3 BASIC19.17■□□□□ 0.66
VSX2P58304 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
VSX2P58304 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VSX2P58304 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC19.17■□□□□ 0.66
VSX2P58304 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
VSX2P58304 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC19.17■□□□□ 0.66
VSX2P58304 ITM2C-210ENST00000620962 501 ntBASIC19.17■□□□□ 0.66
VSX2P58304 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.17■□□□□ 0.66
VSX2P58304 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
VSX2P58304 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VSX2P58304 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
VSX2P58304 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
VSX2P58304 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VSX2P58304 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
VSX2P58304 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.16■□□□□ 0.66
VSX2P58304 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
VSX2P58304 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC19.16■□□□□ 0.66
VSX2P58304 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
VSX2P58304 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC19.16■□□□□ 0.66
VSX2P58304 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
VSX2P58304 AC073130.3-201ENST00000624389 2278 ntBASIC19.16■□□□□ 0.66
VSX2P58304 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VSX2P58304 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
VSX2P58304 PTBP1P-201ENST00000554374 1601 ntBASIC19.16■□□□□ 0.66
VSX2P58304 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.16■□□□□ 0.66
VSX2P58304 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VSX2P58304 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
VSX2P58304 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC19.16■□□□□ 0.66
VSX2P58304 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms