Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LIM2P55344 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIM2P55344 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LIM2P55344 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
LIM2P55344 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.07■□□□□ 0.64
LIM2P55344 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIM2P55344 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LIM2P55344 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LIM2P55344 AL512408.1-201ENST00000569378 2000 ntBASIC19.07■□□□□ 0.64
LIM2P55344 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
LIM2P55344 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.06■□□□□ 0.64
LIM2P55344 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIM2P55344 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIM2P55344 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIM2P55344 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.06■□□□□ 0.64
LIM2P55344 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
LIM2P55344 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
LIM2P55344 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC19.06■□□□□ 0.64
LIM2P55344 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
LIM2P55344 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIM2P55344 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIM2P55344 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.06■□□□□ 0.64
LIM2P55344 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.06■□□□□ 0.64
LIM2P55344 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.06■□□□□ 0.64
LIM2P55344 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIM2P55344 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.06■□□□□ 0.64
LIM2P55344 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.06■□□□□ 0.64
LIM2P55344 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIM2P55344 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIM2P55344 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIM2P55344 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.06■□□□□ 0.64
LIM2P55344 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
LIM2P55344 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.06■□□□□ 0.64
LIM2P55344 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
LIM2P55344 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIM2P55344 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIM2P55344 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
LIM2P55344 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.05■□□□□ 0.64
LIM2P55344 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIM2P55344 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.05■□□□□ 0.64
LIM2P55344 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIM2P55344 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC19.05■□□□□ 0.64
LIM2P55344 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC19.05■□□□□ 0.64
LIM2P55344 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LIM2P55344 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC19.05■□□□□ 0.64
LIM2P55344 RGMA-211ENST00000557420 989 ntTSL 3 BASIC19.05■□□□□ 0.64
LIM2P55344 AFG3L1P-217ENST00000557444 2447 ntBASIC19.05■□□□□ 0.64
LIM2P55344 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LIM2P55344 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
LIM2P55344 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.05■□□□□ 0.64
LIM2P55344 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LIM2P55344 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LIM2P55344 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.04■□□□□ 0.64
LIM2P55344 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIM2P55344 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
LIM2P55344 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIM2P55344 AL162377.1-201ENST00000618844 1793 ntBASIC19.04■□□□□ 0.64
LIM2P55344 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIM2P55344 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIM2P55344 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LIM2P55344 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC19.04■□□□□ 0.64
LIM2P55344 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC19.04■□□□□ 0.64
LIM2P55344 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LIM2P55344 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.04■□□□□ 0.64
LIM2P55344 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC19.04■□□□□ 0.64
LIM2P55344 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LIM2P55344 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
LIM2P55344 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
LIM2P55344 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC19.04■□□□□ 0.64
LIM2P55344 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIM2P55344 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIM2P55344 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.04■□□□□ 0.64
LIM2P55344 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LIM2P55344 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.04■□□□□ 0.64
LIM2P55344 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LIM2P55344 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.04■□□□□ 0.64
LIM2P55344 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.03■□□□□ 0.64
LIM2P55344 PTBP1P-201ENST00000554374 1601 ntBASIC19.03■□□□□ 0.64
LIM2P55344 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIM2P55344 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIM2P55344 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIM2P55344 AC112907.3-201ENST00000577781 2400 ntBASIC19.03■□□□□ 0.64
LIM2P55344 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIM2P55344 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIM2P55344 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIM2P55344 MFF-205ENST00000354503 1085 ntTSL 2 BASIC19.03■□□□□ 0.64
LIM2P55344 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIM2P55344 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIM2P55344 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
LIM2P55344 AC083880.1-201ENST00000608266 535 ntBASIC19.03■□□□□ 0.64
LIM2P55344 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIM2P55344 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIM2P55344 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIM2P55344 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LIM2P55344 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LIM2P55344 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.02■□□□□ 0.64
LIM2P55344 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
LIM2P55344 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
LIM2P55344 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC19.02■□□□□ 0.64
LIM2P55344 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms