Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC28.01■■■□□ 2.07
MSH6P52701 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
MSH6P52701 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC28.01■■■□□ 2.07
MSH6P52701 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC28.01■■■□□ 2.07
MSH6P52701 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC28■■■□□ 2.07
MSH6P52701 VPS72-207ENST00000640458 689 ntTSL 5 BASIC28■■■□□ 2.07
MSH6P52701 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
MSH6P52701 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
MSH6P52701 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC28■■■□□ 2.07
MSH6P52701 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
MSH6P52701 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC27.99■■■□□ 2.07
MSH6P52701 INGX-201ENST00000359239 846 ntBASIC27.99■■■□□ 2.07
MSH6P52701 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC27.99■■■□□ 2.07
MSH6P52701 RNF152P1-201ENST00000397754 604 ntBASIC27.99■■■□□ 2.07
MSH6P52701 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC27.99■■■□□ 2.07
MSH6P52701 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC27.99■■■□□ 2.07
MSH6P52701 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC27.99■■■□□ 2.07
MSH6P52701 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC27.99■■■□□ 2.07
MSH6P52701 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC27.99■■■□□ 2.07
MSH6P52701 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC27.99■■■□□ 2.07
MSH6P52701 PP7080-204ENST00000510714 601 ntTSL 3 BASIC27.99■■■□□ 2.07
MSH6P52701 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC27.98■■■□□ 2.07
MSH6P52701 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
MSH6P52701 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
MSH6P52701 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
MSH6P52701 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC27.98■■■□□ 2.07
MSH6P52701 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
MSH6P52701 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC27.98■■■□□ 2.07
MSH6P52701 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC27.98■■■□□ 2.07
MSH6P52701 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC27.98■■■□□ 2.07
MSH6P52701 PPP1R14BP5-201ENST00000440334 435 ntBASIC27.98■■■□□ 2.07
MSH6P52701 B3GAT3P1-201ENST00000471720 806 ntBASIC27.98■■■□□ 2.07
MSH6P52701 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
MSH6P52701 AC139887.4-201ENST00000607877 719 ntBASIC27.98■■■□□ 2.07
MSH6P52701 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
MSH6P52701 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC27.97■■■□□ 2.07
MSH6P52701 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
MSH6P52701 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC27.97■■■□□ 2.07
MSH6P52701 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC27.97■■■□□ 2.07
MSH6P52701 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC27.97■■■□□ 2.07
MSH6P52701 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
MSH6P52701 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC27.97■■■□□ 2.07
MSH6P52701 HMGA1P5-201ENST00000412453 271 ntBASIC27.97■■■□□ 2.07
MSH6P52701 FAM207BP-201ENST00000447172 505 ntBASIC27.97■■■□□ 2.07
MSH6P52701 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC27.97■■■□□ 2.07
MSH6P52701 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC27.97■■■□□ 2.07
MSH6P52701 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC27.97■■■□□ 2.07
MSH6P52701 ABBA01031674.1-201ENST00000635145 728 ntBASIC27.97■■■□□ 2.07
MSH6P52701 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC27.97■■■□□ 2.07
MSH6P52701 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC27.97■■■□□ 2.07
MSH6P52701 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
MSH6P52701 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC27.96■■■□□ 2.07
MSH6P52701 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC27.96■■■□□ 2.07
MSH6P52701 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC27.96■■■□□ 2.07
MSH6P52701 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
MSH6P52701 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC27.96■■■□□ 2.07
MSH6P52701 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC27.96■■■□□ 2.07
MSH6P52701 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC27.96■■■□□ 2.07
MSH6P52701 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC27.96■■■□□ 2.07
MSH6P52701 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC27.95■■■□□ 2.07
MSH6P52701 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC27.95■■■□□ 2.07
MSH6P52701 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.07
MSH6P52701 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
MSH6P52701 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC27.95■■■□□ 2.06
MSH6P52701 PCED1CP-201ENST00000419887 785 ntBASIC27.95■■■□□ 2.06
MSH6P52701 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC27.95■■■□□ 2.06
MSH6P52701 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC27.95■■■□□ 2.06
MSH6P52701 AL445675.2-201ENST00000620291 557 ntBASIC27.95■■■□□ 2.06
MSH6P52701 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
MSH6P52701 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC27.95■■■□□ 2.06
MSH6P52701 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC27.94■■■□□ 2.06
MSH6P52701 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
MSH6P52701 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
MSH6P52701 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC27.94■■■□□ 2.06
MSH6P52701 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC27.94■■■□□ 2.06
MSH6P52701 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
MSH6P52701 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
MSH6P52701 AC092647.4-201ENST00000457211 535 ntBASIC27.94■■■□□ 2.06
MSH6P52701 YBX1P2-201ENST00000489612 999 ntBASIC27.94■■■□□ 2.06
MSH6P52701 C1QL1P1-201ENST00000568105 661 ntBASIC27.94■■■□□ 2.06
MSH6P52701 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC27.94■■■□□ 2.06
MSH6P52701 AL138966.2-201ENST00000621997 464 ntBASIC27.94■■■□□ 2.06
MSH6P52701 AL121956.5-201ENST00000625261 221 ntBASIC27.94■■■□□ 2.06
MSH6P52701 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC27.94■■■□□ 2.06
MSH6P52701 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC27.94■■■□□ 2.06
MSH6P52701 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC27.93■■■□□ 2.06
MSH6P52701 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
MSH6P52701 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
MSH6P52701 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC27.93■■■□□ 2.06
MSH6P52701 AC097488.1-201ENST00000507834 756 ntBASIC27.93■■■□□ 2.06
MSH6P52701 CD320-202ENST00000537716 1119 ntTSL 2 BASIC27.93■■■□□ 2.06
MSH6P52701 AC093458.2-201ENST00000623150 629 ntBASIC27.93■■■□□ 2.06
MSH6P52701 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
MSH6P52701 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC27.93■■■□□ 2.06
MSH6P52701 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
MSH6P52701 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC27.93■■■□□ 2.06
MSH6P52701 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC27.93■■■□□ 2.06
MSH6P52701 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
MSH6P52701 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC27.92■■■□□ 2.06
MSH6P52701 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC27.92■■■□□ 2.06
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms