Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 CLN6-204ENST00000564752 900 ntTSL 3 BASIC24.7■■□□□ 1.55
BRCA1P38398 AL138966.2-201ENST00000621997 464 ntBASIC24.7■■□□□ 1.55
BRCA1P38398 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC24.7■■□□□ 1.54
BRCA1P38398 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC24.7■■□□□ 1.54
BRCA1P38398 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC24.7■■□□□ 1.54
BRCA1P38398 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
BRCA1P38398 HIST1H2APS4-201ENST00000362070 348 ntBASIC24.7■■□□□ 1.54
BRCA1P38398 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
BRCA1P38398 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
BRCA1P38398 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC24.7■■□□□ 1.54
BRCA1P38398 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC24.7■■□□□ 1.54
BRCA1P38398 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC24.7■■□□□ 1.54
BRCA1P38398 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC24.69■■□□□ 1.54
BRCA1P38398 PCED1CP-201ENST00000419887 785 ntBASIC24.69■■□□□ 1.54
BRCA1P38398 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC24.69■■□□□ 1.54
BRCA1P38398 FDX2-206ENST00000492239 773 ntTSL 2 BASIC24.69■■□□□ 1.54
BRCA1P38398 AC097488.1-201ENST00000507834 756 ntBASIC24.69■■□□□ 1.54
BRCA1P38398 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC24.69■■□□□ 1.54
BRCA1P38398 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
BRCA1P38398 AC093458.2-201ENST00000623150 629 ntBASIC24.69■■□□□ 1.54
BRCA1P38398 AL121956.5-201ENST00000625261 221 ntBASIC24.69■■□□□ 1.54
BRCA1P38398 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC24.69■■□□□ 1.54
BRCA1P38398 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC24.69■■□□□ 1.54
BRCA1P38398 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
BRCA1P38398 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC24.69■■□□□ 1.54
BRCA1P38398 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC24.69■■□□□ 1.54
BRCA1P38398 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC24.69■■□□□ 1.54
BRCA1P38398 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC24.68■■□□□ 1.54
BRCA1P38398 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC24.68■■□□□ 1.54
BRCA1P38398 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC24.68■■□□□ 1.54
BRCA1P38398 FAM207BP-201ENST00000447172 505 ntBASIC24.68■■□□□ 1.54
BRCA1P38398 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC24.68■■□□□ 1.54
BRCA1P38398 CLN6-214ENST00000636314 442 ntTSL 3 BASIC24.68■■□□□ 1.54
BRCA1P38398 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC24.68■■□□□ 1.54
BRCA1P38398 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC24.68■■□□□ 1.54
BRCA1P38398 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
BRCA1P38398 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC24.68■■□□□ 1.54
BRCA1P38398 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC24.68■■□□□ 1.54
BRCA1P38398 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC24.68■■□□□ 1.54
BRCA1P38398 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC24.68■■□□□ 1.54
BRCA1P38398 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC24.68■■□□□ 1.54
BRCA1P38398 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC24.68■■□□□ 1.54
BRCA1P38398 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC24.67■■□□□ 1.54
BRCA1P38398 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC24.67■■□□□ 1.54
BRCA1P38398 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
BRCA1P38398 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC24.67■■□□□ 1.54
BRCA1P38398 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC24.67■■□□□ 1.54
BRCA1P38398 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC24.67■■□□□ 1.54
BRCA1P38398 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC24.67■■□□□ 1.54
BRCA1P38398 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
BRCA1P38398 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC24.67■■□□□ 1.54
BRCA1P38398 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC24.67■■□□□ 1.54
BRCA1P38398 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
BRCA1P38398 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
BRCA1P38398 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC24.66■■□□□ 1.54
BRCA1P38398 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC24.66■■□□□ 1.54
BRCA1P38398 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
BRCA1P38398 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
BRCA1P38398 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
BRCA1P38398 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC24.66■■□□□ 1.54
BRCA1P38398 AC026396.1-201ENST00000419388 421 ntBASIC24.66■■□□□ 1.54
BRCA1P38398 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
BRCA1P38398 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC24.66■■□□□ 1.54
BRCA1P38398 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
BRCA1P38398 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC24.66■■□□□ 1.54
BRCA1P38398 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC24.66■■□□□ 1.54
BRCA1P38398 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
BRCA1P38398 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC24.65■■□□□ 1.54
BRCA1P38398 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC24.65■■□□□ 1.54
BRCA1P38398 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
BRCA1P38398 IPPK-202ENST00000375522 882 ntTSL 3 BASIC24.65■■□□□ 1.54
BRCA1P38398 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC24.65■■□□□ 1.54
BRCA1P38398 YBX1P10-201ENST00000444752 975 ntBASIC24.65■■□□□ 1.54
BRCA1P38398 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC24.65■■□□□ 1.54
BRCA1P38398 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC24.65■■□□□ 1.54
BRCA1P38398 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC24.65■■□□□ 1.54
BRCA1P38398 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC24.65■■□□□ 1.54
BRCA1P38398 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
BRCA1P38398 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC24.65■■□□□ 1.54
BRCA1P38398 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC24.65■■□□□ 1.54
BRCA1P38398 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC24.65■■□□□ 1.54
BRCA1P38398 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
BRCA1P38398 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
BRCA1P38398 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
BRCA1P38398 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC24.64■■□□□ 1.54
BRCA1P38398 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
BRCA1P38398 RNF152P1-201ENST00000397754 604 ntBASIC24.64■■□□□ 1.53
BRCA1P38398 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
BRCA1P38398 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC24.64■■□□□ 1.53
BRCA1P38398 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC24.64■■□□□ 1.53
BRCA1P38398 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.53
BRCA1P38398 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC24.64■■□□□ 1.53
BRCA1P38398 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
BRCA1P38398 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC24.64■■□□□ 1.53
BRCA1P38398 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
BRCA1P38398 MFF-203ENST00000349901 1716 ntTSL 2 BASIC24.63■■□□□ 1.53
BRCA1P38398 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
BRCA1P38398 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
BRCA1P38398 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC24.63■■□□□ 1.53
BRCA1P38398 PP7080-204ENST00000510714 601 ntTSL 3 BASIC24.63■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms