Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
HMGB1P09429 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
HMGB1P09429 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.39
HMGB1P09429 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
HMGB1P09429 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
HMGB1P09429 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC23.7■■□□□ 1.38
HMGB1P09429 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
HMGB1P09429 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC23.7■■□□□ 1.38
HMGB1P09429 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
HMGB1P09429 MIPEPP3-201ENST00000412105 444 ntBASIC23.7■■□□□ 1.38
HMGB1P09429 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
HMGB1P09429 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC23.7■■□□□ 1.38
HMGB1P09429 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC23.7■■□□□ 1.38
HMGB1P09429 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC23.7■■□□□ 1.38
HMGB1P09429 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC23.7■■□□□ 1.38
HMGB1P09429 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC23.7■■□□□ 1.38
HMGB1P09429 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
HMGB1P09429 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
HMGB1P09429 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC23.7■■□□□ 1.38
HMGB1P09429 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
HMGB1P09429 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
HMGB1P09429 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
HMGB1P09429 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC23.69■■□□□ 1.38
HMGB1P09429 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
HMGB1P09429 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC23.69■■□□□ 1.38
HMGB1P09429 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
HMGB1P09429 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC23.69■■□□□ 1.38
HMGB1P09429 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
HMGB1P09429 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC23.69■■□□□ 1.38
HMGB1P09429 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
HMGB1P09429 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC23.69■■□□□ 1.38
HMGB1P09429 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC23.69■■□□□ 1.38
HMGB1P09429 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC23.69■■□□□ 1.38
HMGB1P09429 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC23.69■■□□□ 1.38
HMGB1P09429 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC23.69■■□□□ 1.38
HMGB1P09429 AL691432.2-201ENST00000607222 2038 ntBASIC23.69■■□□□ 1.38
HMGB1P09429 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
HMGB1P09429 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
HMGB1P09429 KRT16P6-202ENST00000425692 1426 ntBASIC23.68■■□□□ 1.38
HMGB1P09429 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC23.68■■□□□ 1.38
HMGB1P09429 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC23.68■■□□□ 1.38
HMGB1P09429 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
HMGB1P09429 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
HMGB1P09429 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
HMGB1P09429 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC23.68■■□□□ 1.38
HMGB1P09429 GPX1P1-201ENST00000388829 606 ntBASIC23.68■■□□□ 1.38
HMGB1P09429 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC23.68■■□□□ 1.38
HMGB1P09429 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
HMGB1P09429 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
HMGB1P09429 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC23.68■■□□□ 1.38
HMGB1P09429 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC23.68■■□□□ 1.38
HMGB1P09429 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC23.68■■□□□ 1.38
HMGB1P09429 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
HMGB1P09429 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC23.68■■□□□ 1.38
HMGB1P09429 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
HMGB1P09429 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
HMGB1P09429 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
HMGB1P09429 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC23.68■■□□□ 1.38
HMGB1P09429 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
HMGB1P09429 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
HMGB1P09429 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
HMGB1P09429 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC23.67■■□□□ 1.38
HMGB1P09429 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC23.67■■□□□ 1.38
HMGB1P09429 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
HMGB1P09429 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
HMGB1P09429 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
HMGB1P09429 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
HMGB1P09429 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC23.67■■□□□ 1.38
HMGB1P09429 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
HMGB1P09429 SERPINH1P1-201ENST00000419794 1249 ntBASIC23.67■■□□□ 1.38
HMGB1P09429 TSPY6P-201ENST00000448518 926 ntBASIC23.67■■□□□ 1.38
HMGB1P09429 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
HMGB1P09429 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC23.67■■□□□ 1.38
HMGB1P09429 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
HMGB1P09429 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC23.67■■□□□ 1.38
HMGB1P09429 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC23.67■■□□□ 1.38
HMGB1P09429 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC23.67■■□□□ 1.38
HMGB1P09429 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC23.67■■□□□ 1.38
HMGB1P09429 AC092118.2-201ENST00000613495 667 ntBASIC23.67■■□□□ 1.38
HMGB1P09429 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC23.67■■□□□ 1.38
HMGB1P09429 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
HMGB1P09429 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
HMGB1P09429 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
HMGB1P09429 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
HMGB1P09429 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
HMGB1P09429 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC23.66■■□□□ 1.38
HMGB1P09429 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
HMGB1P09429 SLC29A4P1-201ENST00000398760 971 ntBASIC23.66■■□□□ 1.38
HMGB1P09429 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC23.66■■□□□ 1.38
HMGB1P09429 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
HMGB1P09429 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC23.66■■□□□ 1.38
HMGB1P09429 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
HMGB1P09429 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
HMGB1P09429 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
HMGB1P09429 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
HMGB1P09429 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
HMGB1P09429 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
HMGB1P09429 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
HMGB1P09429 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
HMGB1P09429 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms