Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CLDN9O95484 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC19.42■□□□□ 0.7
CLDN9O95484 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.42■□□□□ 0.7
CLDN9O95484 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CLDN9O95484 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.42■□□□□ 0.7
CLDN9O95484 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC19.42■□□□□ 0.7
CLDN9O95484 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CLDN9O95484 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC19.42■□□□□ 0.7
CLDN9O95484 AC105020.6-201ENST00000621523 1217 ntBASIC19.42■□□□□ 0.7
CLDN9O95484 OR10C1-204ENST00000622521 1039 ntBASIC19.42■□□□□ 0.7
CLDN9O95484 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CLDN9O95484 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
CLDN9O95484 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLDN9O95484 CD37-204ENST00000535669 1674 ntTSL 2 BASIC19.42■□□□□ 0.7
CLDN9O95484 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLDN9O95484 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CLDN9O95484 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CLDN9O95484 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLDN9O95484 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
CLDN9O95484 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLDN9O95484 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLDN9O95484 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLDN9O95484 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
CLDN9O95484 AL691432.2-201ENST00000607222 2038 ntBASIC19.41■□□□□ 0.7
CLDN9O95484 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.41■□□□□ 0.7
CLDN9O95484 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLDN9O95484 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.41■□□□□ 0.7
CLDN9O95484 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLDN9O95484 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CLDN9O95484 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CLDN9O95484 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CLDN9O95484 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CLDN9O95484 CYP2T3P-201ENST00000601990 817 ntBASIC19.41■□□□□ 0.7
CLDN9O95484 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC19.41■□□□□ 0.7
CLDN9O95484 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLDN9O95484 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CLDN9O95484 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLDN9O95484 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.41■□□□□ 0.7
CLDN9O95484 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CLDN9O95484 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.41■□□□□ 0.7
CLDN9O95484 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
CLDN9O95484 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
CLDN9O95484 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLDN9O95484 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CLDN9O95484 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CLDN9O95484 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLDN9O95484 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
CLDN9O95484 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLDN9O95484 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.4■□□□□ 0.7
CLDN9O95484 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CLDN9O95484 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
CLDN9O95484 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLDN9O95484 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLDN9O95484 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLDN9O95484 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
CLDN9O95484 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.4■□□□□ 0.7
CLDN9O95484 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CLDN9O95484 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC19.4■□□□□ 0.7
CLDN9O95484 MAZ-216ENST00000616501 991 ntTSL 5 BASIC19.4■□□□□ 0.7
CLDN9O95484 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
CLDN9O95484 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CLDN9O95484 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.4■□□□□ 0.7
CLDN9O95484 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CLDN9O95484 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.4■□□□□ 0.7
CLDN9O95484 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.39■□□□□ 0.7
CLDN9O95484 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CLDN9O95484 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.39■□□□□ 0.7
CLDN9O95484 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.39■□□□□ 0.7
CLDN9O95484 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
CLDN9O95484 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CLDN9O95484 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
CLDN9O95484 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
CLDN9O95484 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CLDN9O95484 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC19.39■□□□□ 0.69
CLDN9O95484 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CLDN9O95484 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
CLDN9O95484 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CLDN9O95484 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC19.39■□□□□ 0.69
CLDN9O95484 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
CLDN9O95484 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
CLDN9O95484 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CLDN9O95484 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.39■□□□□ 0.69
CLDN9O95484 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.39■□□□□ 0.69
CLDN9O95484 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
CLDN9O95484 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC19.38■□□□□ 0.69
CLDN9O95484 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CLDN9O95484 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CLDN9O95484 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CLDN9O95484 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CLDN9O95484 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CLDN9O95484 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CLDN9O95484 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC19.38■□□□□ 0.69
CLDN9O95484 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
CLDN9O95484 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CLDN9O95484 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CLDN9O95484 AL355472.2-201ENST00000422958 438 ntBASIC19.38■□□□□ 0.69
CLDN9O95484 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CLDN9O95484 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CLDN9O95484 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC19.38■□□□□ 0.69
CLDN9O95484 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms